rs258896441 SNP Detail

Summary

• ID
  rs258896441
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:76800358 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACGTAGCCCT CTTGCTTCCA
  AGGGGGAGGC ACCTCGGGGC CTGTGGCCAT GGTGGTGGTC TGAGTCTTGC GAATGAGCAG
  TGGCGACTTC ACGGATCTGA TCGGGGAAGT GGAGATCCTC CCCGCTGGAG ACACGGACCT
  GGAAACCCAG CGGCAGAGGT CAGAGCGTGG GGCAAGGCAC CCCAGCAGGT GTGGTGCGGA
  W
  TAGATGGTGG AATGGAAATT TGGCAGCACT TTAAGGTGCG GCGTTAAAAT GTGAGTTTCC
  ATAACCTATC TCGAGGGTAC ATCACGAACC TGAAGCCAAT TTGTTTTAAA TATCAATAAG
  CCCCACATTT ACTTAATTCT AAGTAAGCTA AAGATCTGTG TGCCCCATCT CATTTTCAGG
  CATGGTGGGG GGGAGGAGAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354535441	MGP_WTSI_2_76808071	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258896441					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354535441	MGP_WTSI_2_76808071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:76800358 () rs orientation: forward

Symbol	Name	Function Class
Rr559723	regulatory region 559723	882 bp distal
Rr559724	regulatory region 559724	166 bp proximal
Rr559725	regulatory region 559725	888 bp proximal
Tssr18508	transcription start site region 18508	1543 bp downstream
Tssr24820	transcription start site region 24820	1544 bp upstream
Tssr24821	transcription start site region 24821	1512 bp upstream
Tssr24822	transcription start site region 24822	1482 bp upstream
Tssr24823	transcription start site region 24823	827 bp upstream
Tssr24824	transcription start site region 24824	788 bp upstream
Tssr24825	transcription start site region 24825	333 bp upstream
Tssr24826	transcription start site region 24826	293 bp upstream
Tssr24827	transcription start site region 24827	272 bp upstream
Tssr24828	transcription start site region 24828	189 bp upstream
Tssr24829	transcription start site region 24829	77 bp upstream
Ttn	titin	within coordinates