rs258904352 SNP Detail

Summary

• ID
  rs258904352
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:65139584 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCCCGT CTGCAGACCC
  AGAGGTCACC AAGGTATGCA CCGTCCCATA AGTACTGCTT CCTGACTGGA AGGAAGTGAG
  TCAATATTTG AAACCTCTTT CAGGGTTAAG TTCCCCAGGA TACCACTTAA TAGGGTTTAG
  ATATTGAAGA TAAGCAAGAG CCACTTAGTG CCAGGAACAC AGGTTGATTA TTTATTGCAT
  R
  TATGGGCTGT AACAAGCAAA AGGAGGCTTA GTACAAATCC ATGACCCGTC TCAGAGAGCC
  GACCTTGGCA TCCATGGCGC CCCAGTCGTG GTAGCGCCTG TAGTCTCCAG GCCTGAGCAG
  GTATTGGCGG CCTCGGTAGT TGGGCATCTC ATAGAGGACC CAGCAGCCCT CCAGCACGTG
  CATGGAGTAG ATCTCATGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss349899222	MGP_WTSI_1_65146999	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258904352					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss349899222	MGP_WTSI_1_65146999	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:65139584 () rs orientation: forward

Symbol	Name	Function Class
Cryga	crystallin, gamma A	within coordinates
Gm28845	predicted gene 28845	194 bp downstream
Tssr102	transcription start site region 102	223 bp upstream
Tssr7112	transcription start site region 7112	27 bp downstream
Tssr7113	transcription start site region 7113	83 bp upstream
Tssr7114	transcription start site region 7114	93 bp upstream
Tssr7115	transcription start site region 7115	109 bp upstream
Tssr7116	transcription start site region 7116	170 bp upstream
Tssr7117	transcription start site region 7117	198 bp upstream
Tssr7118	transcription start site region 7118	228 bp upstream
Tssr11968	transcription start site region 11968	within coordinates
Tssr11969	transcription start site region 11969	28 bp downstream
Tssr11970	transcription start site region 11970	202 bp downstream
Tssr11971	transcription start site region 11971	225 bp downstream
Tssr11972	transcription start site region 11972	247 bp downstream