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rs258911885 SNP Detail
Summary
  • ID
    rs258911885
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr5:87843360 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                AAAGCATTGT CTAGGGTAAC
ATGAAGAAAA TAAGTGTTCT TAAGGAGTGT CTCCTAACCT ATTCTACTTA TGGATGGATT
ACAGAGTAAA ATAAAACTGA TGTTCAAGAG TTTTCAAAAT CGTTTCACCT TATCCCAAGC
CAATTTACTG GGGGAGTTAC ACTATTACAT TCGAGTATAC TCCATTGTGT GTATGGCTAG
M
AGTGTGGTAT GCTAGTGGAA TGATGCTATT CTGATGACTA TTAATTTGAA GGCATGCTCT
GCTACATTGC ATCACAGCTT AAGTAGTGTT GCATTCAGTT GTTTCATATC TCACTCCTCT
TTTTGTGGAC TAAAAATGTC CTCAAGGCCA GGTAAACAAA AAATATAAAT GCTATCATAA
AACAAAGTCT GCGCAAAAGC                                            

M = A/C

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss365777307 MGP_WTSI_5_88124526 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258911885 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C A C C C C C C C A C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss365777307 MGP_WTSI_5_88124526 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/C
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr5:87843360 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Csn2 casein beta within coordinates
D5Mit12 DNA segment, Chr 5, Massachusetts Institute of Technology 12 1523 bp distal
D5Mit16 DNA segment, Chr 5, Massachusetts Institute of Technology 16 1483 bp distal
D5Mit16.1 DNA segment, Chr 5, Massachusetts Institute of Technology 16.1 1326 bp distal
D5Mit16.2 DNA segment, Chr 5, Massachusetts Institute of Technology 16.2 1638 bp distal
Tssr1529 transcription start site region 1529 940 bp downstream
Tssr46883 transcription start site region 46883 990 bp downstream
Tssr46884 transcription start site region 46884 975 bp downstream
Tssr46885 transcription start site region 46885 954 bp downstream
Tssr46886 transcription start site region 46886 924 bp downstream
Tssr46887 transcription start site region 46887 907 bp downstream
Tssr46888 transcription start site region 46888 801 bp downstream
Tssr46889 transcription start site region 46889 782 bp downstream
Tssr46890 transcription start site region 46890 749 bp downstream
Tssr46891 transcription start site region 46891 736 bp downstream
Tssr46892 transcription start site region 46892 707 bp downstream
Tssr46893 transcription start site region 46893 681 bp downstream
Tssr46894 transcription start site region 46894 636 bp downstream
Tssr46895 transcription start site region 46895 616 bp downstream
Tssr46896 transcription start site region 46896 537 bp downstream
Tssr51618 transcription start site region 51618 961 bp upstream
Tssr51619 transcription start site region 51619 927 bp upstream
Tssr51620 transcription start site region 51620 917 bp upstream
Tssr51621 transcription start site region 51621 898 bp upstream
Tssr51622 transcription start site region 51622 862 bp upstream
Tssr51623 transcription start site region 51623 846 bp upstream
Tssr51624 transcription start site region 51624 829 bp upstream
Tssr51625 transcription start site region 51625 819 bp upstream
Tssr51626 transcription start site region 51626 807 bp upstream
Tssr51627 transcription start site region 51627 781 bp upstream
Tssr51628 transcription start site region 51628 671 bp upstream
Tssr51629 transcription start site region 51629 577 bp upstream
Tssr51630 transcription start site region 51630 529 bp upstream
Tssr51631 transcription start site region 51631 490 bp upstream
Tssr51632 transcription start site region 51632 231 bp upstream
Tssr51633 transcription start site region 51633 552 bp downstream
Tssr51634 transcription start site region 51634 674 bp downstream
Tssr51635 transcription start site region 51635 1638 bp downstream
Tssr51636 transcription start site region 51636 1664 bp downstream
Tssr51637 transcription start site region 51637 1777 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/10/2024
MGI 6.24 		The Jackson Laboratory