rs258912476 SNP Detail

Summary

• ID
  rs258912476
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:79394498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACACCCA CAAACACAGC
  TGGACTATGT AGTAGTACAG AGAAAAATGA CTCCCAGACC TTCCCCACTT CTCTTCTGAT
  TTCTTGCTCC CCCTACATTG ATGAAAGGGG GGAATGTGTG GATACTGCAA GCCACACTCA
  AAATCTGTCG AATATCTCTG CAGACAGCTA TGCTGTAGGC AACAGTTAGG TCTATCTGTG
  Y
  TCATGTTAGC ATCTGGTTCC CCTCTAGGAG GAACTAGGGA AGGCTTGTGC AGATCCTGGT
  ATCATCTGGG CAGTGGTTTC CGTAGACTTG ACTAGAAGAG GGAAGTAAGG TTTTAGGTAA
  GGATATCCTC TTGGCTCCAT GACCGTGTAA TTCTCCTTTC CAAAAGAAAG AGCTACGGAG
  AGAATGGGGC ATCCTCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372031116	MGP_WTSI_7_86889636	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258912476					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372031116	MGP_WTSI_7_86889636	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:79394498 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19314	CpG island 19314	1521 bp distal
Pex11a	peroxisomal biogenesis factor 11 alpha	1619 bp upstream
Rr649701	regulatory region 649701	1577 bp distal
Rr649702	regulatory region 649702	1327 bp distal
Tssr67364	transcription start site region 67364	1581 bp downstream
Tssr67365	transcription start site region 67365	1563 bp downstream
Tssr73125	transcription start site region 73125	1774 bp upstream
Tssr73126	transcription start site region 73126	1754 bp upstream
Tssr73127	transcription start site region 73127	1717 bp upstream
Tssr73128	transcription start site region 73128	1662 bp upstream
Tssr73129	transcription start site region 73129	1637 bp upstream
Wdr93	WD repeat domain 93	Intron