rs258916644 SNP Detail

Summary

• ID
  rs258916644
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:25015547 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAGAGGAC AAGGGTGTGG
  AAGGTCAAGT CTGCAAGCCC GGCCGCTGTC GCGTCGTGCT CGGGAGAAAG GATCGCGCGC
  CCCGGTCGCC CTGGTCCTAG ATGATCACGG GTTACCTTCA CTCTTTAGCG CCCCAGCGCG
  CACGCGCAAC CTTCAGGCCT CCTCGGCCCC TCCTTCCCCT CCCCTCCCCC TCCCCCTCCC
  M
  ATCTGCGCCT CGCTGGCCGC GGACGGGGAC CAGAGAGGGC GGTCTTCTTG CCGGAAGGTT
  GACGCGGACG CGCTTGCACG CTGCGCGCCT GCGCAGGTTC CGGCGTTCGC GATCAGTCGC
  GCGGGAAGCA GCGTGAAGAG CGGGTGTTTT GAGGGGACCC TGCGGCGATG GCGTCTGGCA
  GCAGTTCCGA TGCGGCGGAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388016959	MGP_WTSI_13_24923433	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258916644					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388016959	MGP_WTSI_13_24923433	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:25015547 () rs orientation: forward

Symbol	Name	Function Class
Acot13	acyl-CoA thioesterase 13	75 bp upstream
Cpgi5387	CpG island 5387	within coordinates
Rr281160	regulatory region 281160	within coordinates
Rr403682	regulatory region 403682	within coordinates
Tdp2	tyrosyl-DNA phosphodiesterase 2	115 bp upstream
Tssr118970	transcription start site region 118970	97 bp upstream
Tssr118971	transcription start site region 118971	136 bp upstream
Tssr121812	transcription start site region 121812	231 bp upstream
Tssr121813	transcription start site region 121813	216 bp upstream
Tssr121814	transcription start site region 121814	156 bp upstream
Tssr121815	transcription start site region 121815	46 bp upstream
Tssr121816	transcription start site region 121816	24 bp downstream