rs258918743 SNP Detail

Summary

• ID
  rs258918743
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:112686821 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CACTGGTGG GGGTTCCTTA CTTGGTCTGT
  GTGTTCTTAG TTTGAACTAA AGGAAGCCTC TCTGCTCAGT GGCCTTAAGT GTCACCCTTA
  CTCGATGAAG ACTGAAGCTA CTACTAGATC TGCTTTCTGA TCCCAATGCT ACTGCTCAAG
  Y
  CACTCAAGCG AGCTTGACCC CTCCTCCCCT TCCAGGAAGC AGCAGCCCAC TCCAACCCTG
  CCCTCATGTC TAAGGATACC GACCCCATGA CAGTGCACAG CTGGCAGGGG CCTCAGTCAG
  AACCCAGGAC ACCATTCCTT CATCTCCCGT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170482	CHEV_12_113958598	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258918743					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112686821 () rs orientation: forward

Symbol	Name	Function Class
Cep170b	centrosomal protein 170B	1129 bp upstream
Cpgi5179	CpG island 5179	873 bp proximal
Gm46382	predicted gene, 46382	Intron
Gm59466	predicted gene, 59466	within coordinates
Rr473583	regulatory region 473583	253 bp proximal
Rr473584	regulatory region 473584	1306 bp proximal
Rr473585	regulatory region 473585	1640 bp proximal
Rr473586	regulatory region 473586	1818 bp proximal
Tssr115398	transcription start site region 115398	1131 bp downstream
Tssr115399	transcription start site region 115399	718 bp upstream
Tssr115400	transcription start site region 115400	1117 bp upstream
Tssr115401	transcription start site region 115401	1442 bp upstream
Tssr115402	transcription start site region 115402	1776 bp upstream
Tssr117886	transcription start site region 117886	1305 bp downstream
Tssr117887	transcription start site region 117887	1343 bp downstream
Tssr117888	transcription start site region 117888	1373 bp downstream