rs258922972 SNP Detail

Summary

• ID
  rs258922972
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:59955008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAACCCCAT GCTTTTTCTC
  TTCCACTTTA CAACCATACC ACCCCCTCTT CCCAAGGGGA AAAAAATAGG AGCAGCAGGA
  GACAGTCCCT GAAAAAGGCT GGTACCTACT TCCACACCAG TCTGGTCATC TTGGCTGGCC
  TCAGCTATTT GGCCATTCTC AGCTTATTTC CCATCTTCGG GAAAGGAGGC TCTGGGCGGA
  M
  AAGCCCTGCA CCGAGATGCT GTTGAAGAAG GGGCTAGGAC TGAGCTGTCA TCCTTTGCCT
  GCTCCCACAA AAAGCCAAGT GGGGGTGGGG GTGGGGTGGG GAGTGGCACT CATGGCTTCC
  AGAGCAAGCC CTGAGCATTT GGGCCCTGTT GACCTTTCTC CTGTCTGATC CTGAGCCCAA
  GGCCTGGGAG ACACTTGGCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323323908	CHEV_10_59581934	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258922972					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:59955008 () rs orientation: forward

Symbol	Name	Function Class
Gm51801	predicted gene, 51801	within coordinates
Rr219869	regulatory region 219869	608 bp distal
Rr219870	regulatory region 219870	within coordinates
Rr228068	regulatory region 228068	1993 bp proximal
Spock2	sparc/osteonectin, cwcv and kazal-like domains proteoglycan 2	within coordinates