rs258924452 SNP Detail

Summary

• ID
  rs258924452
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6953604 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAATGCA GCTGGCTCCA
  AGTGTGATAG CTGTACCCTT GGGGAGGGGG GTGTACCCCT TTCTCCTCAA AGCATGGGCT
  CTTTGTTTCC CCTTTATCAA GCATGGGTCT TTCACACTGA CCCCTCACCC TCACTTCCTC
  CCCCCCCCCC CAGGAAGCTG TGACAGGTGT TTGGGGGAGG GGAGGGCTGT GATGAACTAG
  R
  ACAGCTGGCC CACCAGTGCT CTGGTGAGCC GGAGGTCCCG GATGCTGAGA AGGCACATCT
  GCTAGGTTCA AAGCCCAAGG TCCCCAGCCC TGTCTGTCTG GCGCCCCTGG TGCCCACTGG
  CAGGGACAGG AAGTTCCCCC TCATTGGGCA ATTTGCCTTG GCACAGACCT GATCTGTTTT
  CCTTCCCAGA GCAGCTGTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683912	MGP_WTSI_19_7050726	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258924452					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683912	MGP_WTSI_19_7050726	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6953604 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10537	CpG island 10537	487 bp distal
Fkbp2	FK506 binding protein 2	1501 bp downstream
Gm51400	predicted gene, 51400	1349 bp downstream
Plcb3	phospholipase C, beta 3	1866 bp upstream
Ppp1r14b	protein phosphatase 1, regulatory inhibitor subunit 14B	within coordinates
Rr370444	regulatory region 370444	within coordinates
Rr543522	regulatory region 543522	985 bp distal
Rr543523	regulatory region 543523	1027 bp distal
Tssr154704	transcription start site region 154704	1554 bp downstream
Tssr154705	transcription start site region 154705	1233 bp downstream
Tssr154706	transcription start site region 154706	1165 bp downstream
Tssr154707	transcription start site region 154707	1132 bp downstream
Tssr154708	transcription start site region 154708	1118 bp downstream
Tssr154709	transcription start site region 154709	1111 bp downstream
Tssr154710	transcription start site region 154710	1078 bp downstream
Tssr154711	transcription start site region 154711	1005 bp downstream
Tssr154712	transcription start site region 154712	137 bp upstream
Tssr154713	transcription start site region 154713	179 bp upstream
Tssr154714	transcription start site region 154714	220 bp upstream
Tssr154715	transcription start site region 154715	238 bp upstream
Tssr154716	transcription start site region 154716	264 bp upstream