rs258925782 SNP Detail

Summary

• ID
  rs258925782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:28590266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGAGCCGA CTGCAGATCA
  GGACCTCGGT GGATGGAATC CGGGACCAGG ACTCGCCCCA GCTGAGGCGC TCACCGATGA
  CGCATAGCTT GGCGTCCCAG CAACGCCGTT ACTAAGGAGC GGAGCGCTGT CGGAAACATG
  GATGCAACCA CAGCCCCTCA TCGCATTCCC CCGGAAATGC CTCAGTACGG GGAAGACTAC
  Y
  ACATTTTCGA GATGATGCAG GTGATCAGGC GCCCGAGGAT AGGGAATACG GCTACCGGGC
  CGGGCCGGCA GCATGGTCTG GGGGGAAATC CCTTTCCTCA GTTTCCCCAC CTGTGAAATG
  GCGCAGTAGT CTCCAGGGCC TCTTCTGGCA TTGTATGGGA AACCTCAGCC GGTTCCTGAG
  CCCTGAGTCT TACCTAAGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353481827	MGP_WTSI_2_28555774	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258925782					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353481827	MGP_WTSI_2_28555774	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28590266 () rs orientation: forward

Symbol	Name	Function Class
Ak8	adenylate kinase 8	within coordinates
Cpgi11391	CpG island 11391	within coordinates
Gm75616	predicted gene, 75616	1243 bp downstream
Rr553884	regulatory region 553884	1385 bp distal
Rr553885	regulatory region 553885	614 bp distal
Rr553886	regulatory region 553886	870 bp distal
Rr553887	regulatory region 553887	80 bp distal
Rr553888	regulatory region 553888	1327 bp proximal
Spaca9	sperm acrosome associated 9	603 bp upstream
Tssr16968	transcription start site region 16968	1391 bp downstream
Tssr16969	transcription start site region 16969	436 bp downstream
Tssr16970	transcription start site region 16970	100 bp downstream
Tssr16971	transcription start site region 16971	67 bp downstream
Tssr23291	transcription start site region 23291	595 bp upstream
Tssr23292	transcription start site region 23292	566 bp upstream
Tssr23293	transcription start site region 23293	515 bp upstream