rs258941632 SNP Detail

Summary

• ID
  rs258941632
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50320563 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATAAAACT TACAAACTCA
  CATTTTAATG AAGTACATAC AGATATGTTA AAATAAAGAT GATTGATTGG ACTGAGTTCT
  GAATTAATAA CTAAAATCTT CCTTTCCCAG TGCATGACTA CCATGTAATT CTCACTACAC
  AGTAAGAATT ACATGCTATG AAATTCAGGG TTCAAGTCTT ACCAGAGAGG GAAGACAAAT
  Y
  AAGTTCTCCC AGCATCCTGC ACAGCATTAG TGAGACATTT AACTACCTCG TTTGTTTTGT
  TTTGTTTTGT TTTGTTTTGT TTTGTTTTGT TTTGTTTTAT CTTGTACAGC CCAAATAGAA
  AACATACCGG ATACTTATCG TTGCAAAATT CCCACTTGTT GAAAACTACT GACCCTCATT
  ACCATTGTAC TGAAACGCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357906208	MGP_WTSI_3_50170036	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258941632					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357906208	MGP_WTSI_3_50170036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50320563 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	298 bp downstream
Tssr33102	transcription start site region 33102	319 bp downstream
Tssr33103	transcription start site region 33103	403 bp downstream
Tssr33104	transcription start site region 33104	415 bp downstream
Tssr33105	transcription start site region 33105	476 bp downstream
Tssr33106	transcription start site region 33106	520 bp downstream
Tssr33107	transcription start site region 33107	545 bp downstream
Tssr33108	transcription start site region 33108	609 bp downstream
Tssr33109	transcription start site region 33109	674 bp downstream
Tssr33110	transcription start site region 33110	728 bp downstream
Tssr33111	transcription start site region 33111	761 bp downstream
Tssr33112	transcription start site region 33112	800 bp downstream
Tssr33113	transcription start site region 33113	846 bp downstream
Tssr33114	transcription start site region 33114	870 bp downstream
Tssr33115	transcription start site region 33115	929 bp downstream
Tssr33116	transcription start site region 33116	1334 bp downstream
Tssr33117	transcription start site region 33117	1564 bp downstream
Tssr33118	transcription start site region 33118	1591 bp downstream
Tssr33119	transcription start site region 33119	1617 bp downstream