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rs258945315 SNP Detail
Summary
  • ID
    rs258945315
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:123259710 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                ATTTTAAAAA GAGAAGTCAA
ATGTGTGGTT GTAAGATATA TTTGTATTTA AAATAAGGTT ATCAATTTCA AAATCAGATT
GTGAGAAAGT CTAATAGAAG TGCTCGTAAT GAGTGCTAAT ATGTCAAATT AATTTATTTA
GTTTAATTTT CCTACTCAAG GATACATGTT TATTACAATG TGTGACTGCT GCTGAAGGTT
Y
CTTTAGGGCT TTGTCTGGAA GAAACATGGT CTATATTGAC AGAATATCAT GCAATAAATG
CAGTCCTGAG ACAGAAAAAT GTGAACATGA ATTTTTAAAT AATTTCACTT TGAACCTACT
GAGCAGGTTC TACTTGCGCA GTAGATACAA GTACAGGTGA AATCCAGTTT ATAGAAGAGA
ACACAGAGAA AATGGGGCTC                                            

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss369922382 MGP_WTSI_6_123232769 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258945315 SNP C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C C T C C T C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation
Type		 Alleles
ss369922382 MGP_WTSI_6_123232769 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:123259710 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Clec4e C-type lectin domain family 4, member e within coordinates
Tssr58808 transcription start site region 58808 within coordinates
Tssr58809 transcription start site region 58809 641 bp upstream
Tssr58810 transcription start site region 58810 667 bp upstream
Tssr58811 transcription start site region 58811 703 bp upstream
Tssr63019 transcription start site region 63019 1179 bp upstream
Tssr63020 transcription start site region 63020 247 bp upstream
Tssr63021 transcription start site region 63021 169 bp upstream
Tssr63022 transcription start site region 63022 130 bp upstream
Tssr63023 transcription start site region 63023 75 bp upstream
Tssr63024 transcription start site region 63024 within coordinates
Tssr63025 transcription start site region 63025 47 bp downstream
Tssr63026 transcription start site region 63026 58 bp downstream
Tssr63027 transcription start site region 63027 107 bp downstream
Tssr63028 transcription start site region 63028 120 bp downstream
Tssr63029 transcription start site region 63029 151 bp downstream
Tssr63030 transcription start site region 63030 181 bp downstream
Tssr63031 transcription start site region 63031 238 bp downstream
Tssr63032 transcription start site region 63032 262 bp downstream
Tssr63033 transcription start site region 63033 287 bp downstream
Tssr63034 transcription start site region 63034 306 bp downstream
Tssr63035 transcription start site region 63035 327 bp downstream
Tssr63036 transcription start site region 63036 381 bp downstream
Tssr63037 transcription start site region 63037 411 bp downstream
Tssr63038 transcription start site region 63038 448 bp downstream
Tssr63039 transcription start site region 63039 507 bp downstream
Tssr63040 transcription start site region 63040 565 bp downstream
Tssr63041 transcription start site region 63041 614 bp downstream
Tssr63042 transcription start site region 63042 639 bp downstream
Tssr63043 transcription start site region 63043 649 bp downstream
Tssr63044 transcription start site region 63044 671 bp downstream
Tssr63045 transcription start site region 63045 762 bp downstream
Tssr63046 transcription start site region 63046 781 bp downstream
Tssr63047 transcription start site region 63047 804 bp downstream
Tssr63048 transcription start site region 63048 832 bp downstream
Tssr63049 transcription start site region 63049 847 bp downstream
Tssr63050 transcription start site region 63050 871 bp downstream
Tssr63051 transcription start site region 63051 923 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory