rs258953213 SNP Detail

Summary

• ID
  rs258953213
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98764800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTATAT GTTGTCTGAC
  TCAGTTTCTC ACTCTTTGCC CCTCTCTGTC TCTCTTTCAC TCACTGATTT CACTCTTCAA
  CCTTCAACTC CACGGGGGAG ACTGTTGAAT GACTTCCCTC TGCCAAACCA CACTAGAAAA
  GGAACAAGCA ACCATACCAA GTAGAAAAGA CAGAGACCCT CTGCAGAGGC TGCAATCCAG
  Y
  ATCCTTGCTA ATGCTGCAGA GCCCTAAACA AGTATATACT GATATTACTT TACAGGAAGA
  ACACAACTGT GAGATTGCCA GATGGGAAGA AAGACAGTGT CTGGAACTCC AGCAGCTGGG
  TTTGTGGCCA CCATCTCTAG ATCAGATACA AGACAGACTA TAGTCCCACA ACTGTGGTGT
  ATTTTACGCT GTGTGATCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358967465	MGP_WTSI_3_98661407	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258953213					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358967465	MGP_WTSI_3_98661407	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98764800 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	1854 bp distal
Rr581745	regulatory region 581745	1619 bp distal
Rr581746	regulatory region 581746	within coordinates
Tssr979	transcription start site region 979	430 bp downstream
Tssr980	transcription start site region 980	817 bp downstream
Tssr981	transcription start site region 981	843 bp downstream
Tssr34711	transcription start site region 34711	1403 bp upstream
Tssr34712	transcription start site region 34712	436 bp downstream
Tssr34713	transcription start site region 34713	483 bp downstream
Tssr34714	transcription start site region 34714	522 bp downstream
Tssr34715	transcription start site region 34715	616 bp downstream
Tssr34716	transcription start site region 34716	639 bp downstream
Tssr34717	transcription start site region 34717	699 bp downstream
Tssr34718	transcription start site region 34718	759 bp downstream
Tssr34719	transcription start site region 34719	805 bp downstream
Tssr34720	transcription start site region 34720	826 bp downstream