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rs258962081 SNP Detail
Summary
  • ID
    rs258962081
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr17:84495062 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          CGCAAAGTCA ACTTGGAAGG GTCCCTCCCG CCTCGGCCCG
    GCCCGGCGGC AAGTCTCGGA ACTCCAAAGG GTTCCAGGCC GTCCGCCATC CTTTCCGGCT
    K
    CCTGCTTACC TTGCACAAGA AGTCGATATC GTAGAAGGGT GACAGAAGTG TGGTCGACAT
    TTTTCTGGGT CCTGTAATGG TCGAAATTGC AAGCGTGGA                       
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss399282283 MGP_WTSI_17_84586974 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G T T T G T T T G G G T G G G G G G T G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258962081 SNP G G G G G G G G G G G G G G G G G G G G G T T T G T T T G G G T G G G G G G T G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss399282283 MGP_WTSI_17_84586974 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84495062 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 382 bp distal
Cpgi9566 CpG island 9566 within coordinates
Gm56881 predicted gene, 56881 513 bp upstream
Rr333589 regulatory region 333589 1739 bp proximal
Rr340271 regulatory region 340271 within coordinates
Rr405496 regulatory region 405496 239 bp upstream
Tssr146044 transcription start site region 146044 1873 bp downstream
Tssr146045 transcription start site region 146045 517 bp downstream
Tssr146046 transcription start site region 146046 970 bp upstream
Tssr149651 transcription start site region 149651 1993 bp upstream
Tssr149652 transcription start site region 149652 1613 bp upstream
Tssr149653 transcription start site region 149653 1561 bp upstream
Tssr149654 transcription start site region 149654 1437 bp upstream
Tssr149655 transcription start site region 149655 1293 bp upstream
Tssr149656 transcription start site region 149656 1252 bp upstream
Tssr149657 transcription start site region 149657 1022 bp upstream
Tssr149658 transcription start site region 149658 979 bp upstream
Tssr149659 transcription start site region 149659 943 bp upstream
Tssr149660 transcription start site region 149660 917 bp upstream
Tssr149661 transcription start site region 149661 854 bp upstream
Tssr149662 transcription start site region 149662 814 bp upstream
Tssr149663 transcription start site region 149663 745 bp upstream
Tssr149664 transcription start site region 149664 702 bp upstream
Tssr149665 transcription start site region 149665 630 bp upstream
Tssr149666 transcription start site region 149666 568 bp upstream
Tssr149667 transcription start site region 149667 468 bp upstream
Tssr149668 transcription start site region 149668 444 bp upstream
Tssr149669 transcription start site region 149669 382 bp upstream
Tssr149670 transcription start site region 149670 103 bp downstream
Tssr149671 transcription start site region 149671 193 bp downstream
Tssr149672 transcription start site region 149672 305 bp downstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory