rs258962081 SNP Detail

Summary

• ID
  rs258962081
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:84495062 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CGCAAAGTCA ACTTGGAAGG GTCCCTCCCG CCTCGGCCCG
  GCCCGGCGGC AAGTCTCGGA ACTCCAAAGG GTTCCAGGCC GTCCGCCATC CTTTCCGGCT
  K
  CCTGCTTACC TTGCACAAGA AGTCGATATC GTAGAAGGGT GACAGAAGTG TGGTCGACAT
  TTTTCTGGGT CCTGTAATGG TCGAAATTGC AAGCGTGGA                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss399282283	MGP_WTSI_17_84586974	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	T	G	T	T	T	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258962081					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	T	T	G	T	T	T	G	G	G	T	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss399282283	MGP_WTSI_17_84586974	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:84495062 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9565	CpG island 9565	382 bp distal
Cpgi9566	CpG island 9566	within coordinates
Gm56881	predicted gene, 56881	513 bp upstream
Rr333589	regulatory region 333589	1739 bp proximal
Rr340271	regulatory region 340271	within coordinates
Rr405496	regulatory region 405496	239 bp upstream
Tssr146044	transcription start site region 146044	1873 bp downstream
Tssr146045	transcription start site region 146045	517 bp downstream
Tssr146046	transcription start site region 146046	970 bp upstream
Tssr149651	transcription start site region 149651	1993 bp upstream
Tssr149652	transcription start site region 149652	1613 bp upstream
Tssr149653	transcription start site region 149653	1561 bp upstream
Tssr149654	transcription start site region 149654	1437 bp upstream
Tssr149655	transcription start site region 149655	1293 bp upstream
Tssr149656	transcription start site region 149656	1252 bp upstream
Tssr149657	transcription start site region 149657	1022 bp upstream
Tssr149658	transcription start site region 149658	979 bp upstream
Tssr149659	transcription start site region 149659	943 bp upstream
Tssr149660	transcription start site region 149660	917 bp upstream
Tssr149661	transcription start site region 149661	854 bp upstream
Tssr149662	transcription start site region 149662	814 bp upstream
Tssr149663	transcription start site region 149663	745 bp upstream
Tssr149664	transcription start site region 149664	702 bp upstream
Tssr149665	transcription start site region 149665	630 bp upstream
Tssr149666	transcription start site region 149666	568 bp upstream
Tssr149667	transcription start site region 149667	468 bp upstream
Tssr149668	transcription start site region 149668	444 bp upstream
Tssr149669	transcription start site region 149669	382 bp upstream
Tssr149670	transcription start site region 149670	103 bp downstream
Tssr149671	transcription start site region 149671	193 bp downstream
Tssr149672	transcription start site region 149672	305 bp downstream
Zfp36l2	zinc finger protein 36, C3H type-like 2	within coordinates