rs258966550 SNP Detail

Summary

• ID
  rs258966550
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115219938 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCTGGCAG AAAGAACCCC
  TGGCCTCGCG GAGGCTAGCA TCCGGTCCTG TGTCCTTCTC TCCACAGCAA AGCGTGCAGG
  AGGTGCAGCT GAAGAAGACC CGTGCCTCTG CAGCACAGCC ATCTGTCAGA TCTTCCAGCA
  AGGCTATTTC TACCTGTATC CCTTCAACAT CGAGTACAGC CTCTTTGCTT CCACCATGCT
  R
  TATGTCATGT GGAAGAATGT GGGAAGGCTG CTCGCCTCCA CCCACGGCCA CGGCCACACA
  CCGTCCAGGG TCAGCCTGTT CCGGGAGACC TTCTTTGCCG GCCCAGTCTT GGGCCTGCTC
  CTCTTTGTGG TGGGGTTGGC TGTCTTCATC CTTTATGAGG TCCAGGTGAG TGGAGAGAGA
  GGCCACACCC GACAGGCCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323862367	CHEV_11_115190426	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258966550					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115219938 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4123	CpG island 4123	31 bp proximal
Otop2	otopetrin 2	within coordinates
Rr459849	regulatory region 459849	413 bp proximal