rs258968529 SNP Detail

Summary

• ID
  rs258968529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:161079639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTATTAGAGA CAGATGGCAG
  ACATTCTGCA CAGAAACCAG AATCTGTTAG AAGCTCAGCC TGGTGATCGC AAACCAGAAA
  CCCCAACTAC TCTGGAGAAA GGAGAAGGAC TGTAAATTCT GAGCTACAGA GGAAGTTCAA
  GGCCAACCTG GGGAACTTAG AGTCTGTCTC AAAATAAAGG GGAATGAGGA AGCAGGTGTG
  Y
  GGCAGGATGC TTGACTGGAG TGTGGGAGGC CCTAGGTCCA ATCGCCAGCG CTAAGGTGTG
  GTGGAGGACA ATGTATTAGA AAGCCCCGAG TCCTAGCTGG AGAAACTAAA GCGAGTTTAT
  GTAAGTTAAG TGAGGCTACC TGGAGGTCAG CTTCAGATTG TGTGGCCCAG CCTGGGGAAG
  CCTGCAGGAC AGTAGACTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352143834	MGP_WTSI_1_163182200	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258968529					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352143834	MGP_WTSI_1_163182200	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:161079639 () rs orientation: forward

Symbol	Name	Function Class
Cpgi926	CpG island 926	639 bp distal
Gm70781	predicted gene, 70781	within coordinates
Prdx6	peroxiredoxin 6	859 bp upstream
Rr372334	regulatory region 372334	1347 bp downstream
Rr396460	regulatory region 396460	720 bp downstream
Rr396461	regulatory region 396461	258 bp downstream
Rr421776	regulatory region 421776	1317 bp distal
Rr421777	regulatory region 421777	915 bp distal
Rr421778	regulatory region 421778	360 bp distal
Rr421779	regulatory region 421779	641 bp proximal
Tssr14577	transcription start site region 14577	1160 bp upstream
Tssr14578	transcription start site region 14578	930 bp upstream
Tssr14579	transcription start site region 14579	925 bp upstream
Tssr14580	transcription start site region 14580	883 bp upstream
Tssr14581	transcription start site region 14581	541 bp upstream