rs258968819 SNP Detail

Summary

• ID
  rs258968819
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129307410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCAAAGAAC ACATTTCAAG
  GTTTCTGAAT TAAGCAGTAA CCATAAACAC TATGCAAAGG AAGAGTAGGG GCTAATGAAC
  TAAGTTATGA TCTACTGTGC TGCTGATGAA GATGCTGCAG TGGAGTGTGA ACAGCAATGG
  CCTATGAGAG AGGAGAGCCT GATGACAGAG TAAGAGGATA TAGGATCTTC AGTAGAACCT
  R
  AACACTTCAC TGTCTGGAGA GTCCGTGTGG TGGTAACGGT GGGTGGGCTC GTCTCCCACC
  CATTGCTTCT ATTAGAGTAA AGCTGGAATC AGGGTTCCAT GCACCTGTGG CCCTGAGTTA
  ACAAATGCAG CTTAGCATAC CCCACTTTGC TTGCCCCTCC CCACCACCAC TATAGCTGAC
  ACAATTTTGA CACAAATATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
ss370048839	MGP_WTSI_6_129280465	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C58/J	CZECHII/EiJ	FVB/NJ	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	SWR/J	ZALENDE/EiJ
rs258968819					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370048839	MGP_WTSI_6_129280465	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129307410 () rs orientation: forward

Symbol	Name	Function Class
Clec2m	C-type lectin domain family 2, member m	within coordinates
Tssr63594	transcription start site region 63594	1291 bp downstream
Tssr63595	transcription start site region 63595	1339 bp downstream
Tssr63596	transcription start site region 63596	1358 bp downstream