rs258972922 SNP Detail

Summary

• ID
  rs258972922
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116252414 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAACAGCA GCCTCAAAGG
  ATGTCATAAA TAGTGTGCGC CAGGCTCTAT TCACAGTGAA GCCTGCAACC TCTGAATTAA
  GAGAGAGAAG AAGAAAAGAC TTGTGTTCTT CAGTGTTTAT TCAGGGGACA AGGGTGCTCT
  TGACAGCTTC CACTCTGAGG CTGAGAGAAC AGTGATGTGT GGATATGAGA GAGGCAGTCA
  Y
  CCCTCCACTT CCTTTTCAAA ACTCCGTGGA AACACCCGAG GGGAGCCTGT CCTTAAATCC
  CAACTTCATG CTAAGGGTAG CACGTCTGCC TGCGGGATTA GAAGAAAGCT GAGGCCATTG
  CTAAGTTGTC CCCTCCACTG AAAATATGCA TCTCATCTGA ATGAGGCTTG GTTCTAGGTG
  GTAAATAGGG GCCGGGGGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323488216	CHEV_10_115853565	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258972922					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116252414 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2214	CpG island 2214	1663 bp proximal
Gm67349	predicted gene, 67349	within coordinates
Kcnmb4	potassium large conductance calcium-activated channel, subfamily M, beta member 4	1352 bp downstream
Kcnmb4os1	potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1	1612 bp upstream
Rr439316	regulatory region 439316	within coordinates
Rr439317	regulatory region 439317	1639 bp proximal
Tssr95869	transcription start site region 95869	1539 bp upstream
Tssr95870	transcription start site region 95870	1608 bp upstream
Tssr95871	transcription start site region 95871	1630 bp upstream