rs258975781 SNP Detail

Summary

• ID
  rs258975781
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:121849300 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAAAAAGAG GGTTCAAATG
  AAGGTCAGAG ACCCAACAGT TCGCCGGGGT GAATAAAGTG GGGCAAAGTG AAGCAGCTGG
  CGGTGGCTTC TGAGGCGGCA AGCTTCCCCA CGCTGGCAGG GCAAGTCGGC ACGCAGTGGC
  ACCTGGGGGC CTACTGTGTG CCAGGCCCCG ATTGCAGGTC CCCGCCCCGA AGGTGCCCGC
  R
  GGCCATCCTC TAAGTTGTGA TTTGGTGGGG TGGGGGTGGG GTGAAATCAA GGTCCTCCAA
  GGGGGTCGAG GACACCCGAG CAGCTCACGG CGCCCGTCCC CGAAGCAGAT CCCGAAGTTC
  AGACCCGCCT TGGCGAGGGC GGATCCCTCC TGGCCCCCTC CACGGCCCTA GTTCGACCCC
  GGGGAGAGCG AACGCGGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366502163	MGP_WTSI_5_122161246	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258975781					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366502163	MGP_WTSI_5_122161246	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:121849300 () rs orientation: forward

Symbol	Name	Function Class
1700064N11Rik	RIKEN cDNA 1700064N11 gene	within coordinates
Atxn2	ataxin 2	494 bp upstream
Cpgi16531	CpG island 16531	within coordinates
Rr619651	regulatory region 619651	within coordinates
Rr619652	regulatory region 619652	218 bp proximal
Rr619653	regulatory region 619653	422 bp proximal
Rr619654	regulatory region 619654	1772 bp proximal
Tssr48591	transcription start site region 48591	548 bp upstream
Tssr48592	transcription start site region 48592	671 bp upstream
Tssr48593	transcription start site region 48593	802 bp upstream
Tssr48594	transcription start site region 48594	831 bp upstream
Tssr48595	transcription start site region 48595	1230 bp upstream
Tssr53053	transcription start site region 53053	218 bp downstream