rs258986354 SNP Detail

Summary

• ID
  rs258986354
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:12772607 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGAGGCGG GTAGTGAGTG
  GCCGTTTGGC TCTCGGTGGT TCCATTCAAT CTTACACTTA CGCGGAGCGC AGCGGAACCG
  GGCTAGACTG GATCTTTGCT CTCTGAGGAT TCAGCAAACG CAGGGCCTGG ACGTTTTAAG
  GGACGTTGTC GAAGGGTGCA GAAGCAGGCT CCCCTAATCC CACCGCAATC CCAGATTCGG
  R
  TTGATGTAAA CTAGTTTAAA TTTCGAATTG CTCTGGAGGC TTGAGGCATC AAGTTGGCTT
  GAGCCCAGGC GCTCAGGGAT ACCCTAGGCA ACACATCGAG ACTCTTGTTC CTTAAAATAG
  ATTTCTATTG TGCAACAGGC TGTGAGCAAC TGTGTAGTTC TAGGGTCCAA GGTGGACGTG
  GGTATAGGAC TCATAACTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss370654992	MGP_WTSI_7_13624029	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs258986354					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370654992	MGP_WTSI_7_13624029	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:12772607 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18335	CpG island 18335	within coordinates
Gm71833	predicted gene, 71833	within coordinates
Rr400106	regulatory region 400106	166 bp downstream
Rr642445	regulatory region 642445	692 bp distal
Rr642446	regulatory region 642446	1014 bp distal
Rr642447	regulatory region 642447	418 bp distal
Rr642448	regulatory region 642448	within coordinates
Rr642449	regulatory region 642449	1086 bp proximal
Tssr64535	transcription start site region 64535	980 bp downstream
Tssr64536	transcription start site region 64536	633 bp downstream
Tssr70652	transcription start site region 70652	1013 bp upstream
Tssr70653	transcription start site region 70653	988 bp upstream
Tssr70654	transcription start site region 70654	848 bp upstream
Tssr70655	transcription start site region 70655	729 bp upstream
Tssr70656	transcription start site region 70656	711 bp upstream
Tssr70657	transcription start site region 70657	373 bp upstream
Tssr70658	transcription start site region 70658	358 bp upstream
Ube2m	ubiquitin-conjugating enzyme E2M	405 bp upstream