rs258989113 SNP Detail

Summary

• ID
  rs258989113
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109481941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTTGGTA GACCTATCGC
  CCACCAAGAG CTGTTCTACT GCTCAGTAGT AGCTTGTGAG AGTTCTGCCA TAGTTTTACC
  AAAAATTTGG GTTCAGATTT CTAGCCCTTT CCCCTGTCAG CACAAACTGA GTCAATACTG
  AGTTGCATTG ATCAAACCAA GCTCTAATAA CATTTCCTGT GGTTTAACAA AGCCTAACTC
  C
  AAATGGCTTA GAAATATGTG TTATATAAGT ATATCTCTGA GAATACAGCT ACATCGAGGC
  ATGAAGGAGA GTGTAAAATA TAACAGACCT CAGAACCCCA TTATTTTGGC CATCAGTCAA
  AAATTACAAA AGTTTTACTG ACTCTGAAAA AATATTTTAG CACCAACAAA CAAAACCAAA
  GCCAAAATAA AAAGCCAAAT                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320869980	CHEV_3_109377543	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258989113					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109481941 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	1155 bp distal
Rr583432	regulatory region 583432	708 bp distal
Rr583433	regulatory region 583433	166 bp distal
Tssr31300	transcription start site region 31300	635 bp downstream
Tssr31301	transcription start site region 31301	608 bp downstream
Tssr31302	transcription start site region 31302	599 bp downstream
Vav3	vav 3 oncogene	Intron