rs258992408 SNP Detail

Summary

• ID
  rs258992408
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69299436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGAAAAG AGTGTACTGA
  AGTTGCCAAC ACAGCGAGGG CCCAAAGGCT GATCTGAACT GTCAGTGCAG GAAGACTGAG
  GGCAAGGCGC CAGGACAGAC ATCAGCATCA AGAGCCCCTA GAATCGCGCA AGTGGGTAAT
  AGGAATATGG CACAAATAGC GGGGAGTCAG CGACGGTTAA CAACCCAGCC ACTGCACTGT
  Y
  TGACAGGCTC CCAATCCTGG GCCACTAGGG CGACCTACCG CGCGCCTGCT TACCCAGCCT
  CCGTGGGAGC GTCCTCTCAC AGCTTCAAGA GCTTCAGAAA TTTAGCCAAT CACAAGACTT
  CTCTATCCAC AGAAAGCCAA TCATCACCCT TGTCTCCGCC TCAGTAACAG CCTAGCAGGA
  ACCAATAGGA GTAAGGTTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383783458	MGP_WTSI_11_69222112	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258992408					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383783458	MGP_WTSI_11_69222112	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69299436 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3128	CpG island 3128	within coordinates
Gm72933	predicted gene, 72933	1144 bp downstream
Kdm6b	KDM1 lysine (K)-specific demethylase 6B	within coordinates
Rr247028	regulatory region 247028	within coordinates
Rr369256	regulatory region 369256	1264 bp upstream
Rr402670	regulatory region 402670	within coordinates
Rr402671	regulatory region 402671	749 bp upstream
Tssr3543	transcription start site region 3543	70 bp downstream
Tssr102455	transcription start site region 102455	1732 bp downstream
Tssr102456	transcription start site region 102456	301 bp upstream
Tssr102457	transcription start site region 102457	671 bp upstream
Tssr102458	transcription start site region 102458	1064 bp upstream
Tssr102459	transcription start site region 102459	1084 bp upstream
Tssr102460	transcription start site region 102460	1117 bp upstream
Tssr102461	transcription start site region 102461	1160 bp upstream
Tssr102462	transcription start site region 102462	1188 bp upstream
Tssr102463	transcription start site region 102463	1941 bp upstream
Tssr108661	transcription start site region 108661	1840 bp upstream
Tssr108662	transcription start site region 108662	990 bp upstream
Tssr108663	transcription start site region 108663	961 bp upstream
Tssr108664	transcription start site region 108664	779 bp upstream
Tssr108665	transcription start site region 108665	48 bp upstream
Tssr108666	transcription start site region 108666	536 bp downstream
Tssr108667	transcription start site region 108667	782 bp downstream
Tssr108668	transcription start site region 108668	803 bp downstream
Tssr108669	transcription start site region 108669	818 bp downstream
Tssr108670	transcription start site region 108670	937 bp downstream
Tssr108671	transcription start site region 108671	1274 bp downstream
Tssr108672	transcription start site region 108672	1758 bp downstream
Tssr108673	transcription start site region 108673	1786 bp downstream
Tssr108674	transcription start site region 108674	1830 bp downstream
Tssr108675	transcription start site region 108675	1997 bp downstream