rs258995273 SNP Detail

Summary

• ID
  rs258995273
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:50319970 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCACATGT TTGTACACTC
  GTGCCAAGGA ATTCAAAGAT ACATCTCTAT GCTGTGCTCA CAACTCACCA CTCAGCATCT
  GTGTATCAAA ACCACCTTGC CCTTTTAAGT ATTCACCATT TGTACAAAAT ACAGCCATCA
  CCTTCCCCAA GGTTCAACAT CGCAATGCCA TGGTAAAGAA CTTAGCCAGA CGTGAGGAAC
  R
  CAGAGAACAC AGGGTACCAT TTTTGTCTAG GCAGTGTGTT TCCAATCCTG TATCGAGATC
  ACCAGAACAA AGGTGCCATG CTCCTACATG GAGAATGTTC TAAGGTCATC AGAAACACAG
  TCTAGATCCA ACACAGAGCT TAGCAAGTTT GTAAAATATA TCTGGAGCAC AGATCAAAGG
  ACAGTTGTGA AGGTAGTCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357906191	MGP_WTSI_3_50169443	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258995273					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357906191	MGP_WTSI_3_50169443	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:50319970 () rs orientation: forward

Symbol	Name	Function Class
Slc7a11	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	within coordinates
Tssr33101	transcription start site region 33101	891 bp downstream
Tssr33102	transcription start site region 33102	912 bp downstream
Tssr33103	transcription start site region 33103	996 bp downstream
Tssr33104	transcription start site region 33104	1008 bp downstream
Tssr33105	transcription start site region 33105	1069 bp downstream
Tssr33106	transcription start site region 33106	1113 bp downstream
Tssr33107	transcription start site region 33107	1138 bp downstream
Tssr33108	transcription start site region 33108	1202 bp downstream
Tssr33109	transcription start site region 33109	1267 bp downstream
Tssr33110	transcription start site region 33110	1321 bp downstream
Tssr33111	transcription start site region 33111	1354 bp downstream
Tssr33112	transcription start site region 33112	1393 bp downstream
Tssr33113	transcription start site region 33113	1439 bp downstream
Tssr33114	transcription start site region 33114	1463 bp downstream
Tssr33115	transcription start site region 33115	1522 bp downstream
Tssr33116	transcription start site region 33116	1927 bp downstream