rs258997551 SNP Detail

Summary

• ID
  rs258997551
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:92133937 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACTCCAG AGATTCTTCA
  TTCCCCCTGA ATAAGGTGAG ATTCTAGCTT CAAGGACCTC AAGTTGAGCA ACACCCTCTG
  TTTGTAGTGT CCACTGAACA CACCAGCAGC CTTTGCTCCG TGGCGTGGCT TATGATAGAT
  ATTTTTCTTT GTGACTTTTA CCTGTCTTAA TGGCACCGCA GCCACCTCTA TATAAACCTG
  K
  GCCCCTTTAA ACCTTTCTAA CATCATCATT TTTACTCACA GTACTTTCAG TATATATGCA
  ATATGCTTAG TTTTCTTATT AGTCCTGGGT CTACAGGTTT ACTGGTTGAA GTGTTTGTAT
  AGAAGTTTGC ATGGTCTATA GTATAAACTT ATAGACTTTT TGCTGTCTAT ACGTACATTG
  TAAACAGCGT TTGTACTATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378468594	MGP_WTSI_9_92146722	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258997551					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378468594	MGP_WTSI_9_92146722	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:92133937 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22145	CpG island 22145	1128 bp distal
Gm67683	predicted gene, 67683	1367 bp upstream
Plscr1	phospholipid scramblase 1	within coordinates
Rr206878	regulatory region 206878	within coordinates
Rr383753	regulatory region 383753	513 bp downstream
Rr401603	regulatory region 401603	1011 bp upstream
Tssr86498	transcription start site region 86498	1850 bp downstream
Tssr86499	transcription start site region 86499	1824 bp downstream
Tssr86500	transcription start site region 86500	1816 bp downstream
Tssr86501	transcription start site region 86501	1786 bp downstream
Tssr86502	transcription start site region 86502	1757 bp downstream
Tssr86503	transcription start site region 86503	1697 bp downstream
Tssr86504	transcription start site region 86504	1610 bp downstream
Tssr86505	transcription start site region 86505	1573 bp downstream
Tssr90887	transcription start site region 90887	1398 bp upstream
Tssr90888	transcription start site region 90888	1356 bp upstream