rs258998269 SNP Detail

Summary

• ID
  rs258998269
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:83689789 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGAGTGGC CCTGGGGATC
  TGAGAGCCAG CTAGGGCAGG GCATGGAGGT ACAGGAAGCT CTCTTAAATT AAGACGCTGC
  CAGGGACCCT GAATAAAGAA ACACTCCTGG GAATAGGTGT GGTCATTGGA AGGCTGGGTG
  GCTACTGCCA TTCTAGGGAC CCGCTTGATG GTGTAAGACA GTTACACCAC CAGGAATCCC
  S
  GCAGGTGTGA GGACTTGTAG GTTACCTGGG GTTAATATGA ATTCCCTTTT GTCATCTGAG
  GGGTTCTAAG GACAAGGAGC GACCACCAGT TGAGTTTCGT TGAGGGAATC TGCAAGCCTT
  CCAGAAATGA AGACACAGCC TAAGCTCTTA GGCTAAGGAC CTTGCCAGTG CTATGCATTA
  AGAATAGGCG TCTCCCCTGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369037724	MGP_WTSI_6_83662801	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258998269					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369037724	MGP_WTSI_6_83662801	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:83689789 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17611	CpG island 17611	377 bp distal
Cpgi17612	CpG island 17612	1759 bp proximal
D6Mit8	DNA segment, Chr 6, Massachusetts Institute of Technology 8	1062 bp proximal
D6Mit8.1	DNA segment, Chr 6, Massachusetts Institute of Technology 8.1	1219 bp proximal
D6Mit8.2	DNA segment, Chr 6, Massachusetts Institute of Technology 8.2	1017 bp proximal
Gm32943	predicted gene, 32943	within coordinates
Gm55235	predicted gene, 55235	1875 bp downstream
Gm66907	predicted gene, 66907	1742 bp upstream
Rr632917	regulatory region 632917	1886 bp distal
Rr632919	regulatory region 632919	1533 bp distal
Rr632920	regulatory region 632920	109 bp distal
Rr632921	regulatory region 632921	1252 bp proximal
Rr632922	regulatory region 632922	1753 bp proximal
Tssr57361	transcription start site region 57361	1519 bp downstream
Tssr57362	transcription start site region 57362	1729 bp upstream
Tssr61702	transcription start site region 61702	1942 bp upstream
Vax2	ventral anterior homeobox 2	within coordinates
Vax2os	ventral anterior homeobox 2, opposite strand	606 bp upstream