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rs258998699 SNP Detail
Summary
  • ID
    rs258998699
  • Variation Type
    SNP
  • Alleles
    G/T
Genome Location and Flanking Sequence
  • Location
    Chr17:84496230 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CGGCCTGTGG GGCAGAGCCG
    AGTGTCTGAG GACAAGGCGC TGGCTTTGCT AATCACATCA CAAGACCTTG AGCCTGGGCC
    AAAGGCGCCG AGTGGCGCGG GGTGTCCGGG GCGGGAAAGC CTATTCCAGG GGACTAGAGG
    GAAGTCGGAG GAGCAGTGTG GACATAGAGG AAGTCACTTC CTTCACCTTT GTGCCTGCTG
    K
    TTGGCCTGGC CTCCTCTCGG GGATGTGGGT GCAGCTCCTA GCCAAGGCTT CCCGCCTGTA
    CAGCCTTGGC CTGTCGAATC CTGCAACCTT CCTCCTTCTG CTGTGGGAGG CGCGGCATTG
    AATCTAAGCT TTGTGTGAGC TGCCGGAGGC GAGGCGGTGA TTGCTGAACC ACCACCCAGG
    TTGGGGGAAA GAGGTCCTCA                                            
    
    K = G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss399282300 MGP_WTSI_17_84588142 EVA_MGPV3 EVA_MGPV3 f SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258998699 SNP G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G G T G G G G G G G G G G G
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss399282300 MGP_WTSI_17_84588142 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:84496230 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi9565 CpG island 9565 1550 bp distal
Cpgi9566 CpG island 9566 within coordinates
Gm36279 predicted gene, 36279 1078 bp upstream
Gm56881 predicted gene, 56881 within coordinates
Rr333589 regulatory region 333589 571 bp proximal
Rr333590 regulatory region 333590 1971 bp proximal
Rr340271 regulatory region 340271 within coordinates
Rr405496 regulatory region 405496 628 bp downstream
Thada thyroid adenoma associated 1274 bp downstream
Tssr146045 transcription start site region 146045 1685 bp downstream
Tssr146046 transcription start site region 146046 176 bp downstream
Tssr149662 transcription start site region 149662 1982 bp upstream
Tssr149663 transcription start site region 149663 1913 bp upstream
Tssr149664 transcription start site region 149664 1870 bp upstream
Tssr149665 transcription start site region 149665 1798 bp upstream
Tssr149666 transcription start site region 149666 1736 bp upstream
Tssr149667 transcription start site region 149667 1636 bp upstream
Tssr149668 transcription start site region 149668 1612 bp upstream
Tssr149669 transcription start site region 149669 1550 bp upstream
Tssr149670 transcription start site region 149670 1045 bp upstream
Tssr149671 transcription start site region 149671 903 bp upstream
Tssr149672 transcription start site region 149672 848 bp upstream
Zfp36l2 zinc finger protein 36, C3H type-like 2 855 bp upstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory