rs258999435 SNP Detail

Summary

• ID
  rs258999435
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69490040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTAGAA CGGTAACGTG
  TACATATGCA TGCATGCACA GCATCATGGA GGCCAAAATA AAATGTAACA TTCAGCTATG
  AAGAATACAT TCCTTCTCCT ATATAGATCA GGATCCTGGC TGGGTACGGT GATGCACCTT
  AGCACTCAGA GAGCTGAAAC AGGAGAAATA CCTTAAGTTT GAAATAAAAA AGAAAAAAAA
  W
  TTTTGAACCC TACAGTTCCT AGTTTTTATA CGTTAGAATC AGCTTCATCT AGTCAATGAA
  TCTGTCTCAA AAGCATTTTC AAATCTGGTC TCCTAAACTG AAGTCCCAGC CCAGGTGCCT
  TCTCCTCTGA GAGAAGTCCC CCTGGAGCCC CTGGCAACAG ATCACTGTCT GTCACCCGCT
  GGCTCTCCTT CCTGGGAGCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383787273	MGP_WTSI_11_69412716	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258999435					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383787273	MGP_WTSI_11_69412716	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69490040 () rs orientation: forward

Symbol	Name	Function Class
Atp1b2	ATPase, Na+/K+ transporting, beta 2 polypeptide	522 bp downstream
Gm72066	predicted gene, 72066	515 bp upstream
Rr386229	regulatory region 386229	193 bp upstream
Rr450033	regulatory region 450033	334 bp proximal
Rr450034	regulatory region 450034	375 bp proximal
Rr450035	regulatory region 450035	827 bp proximal
Tssr3544	transcription start site region 3544	1481 bp downstream
Tssr102487	transcription start site region 102487	799 bp upstream
Tssr102488	transcription start site region 102488	1949 bp upstream
Tssr108712	transcription start site region 108712	793 bp downstream
Tssr108713	transcription start site region 108713	938 bp downstream
Tssr108714	transcription start site region 108714	1020 bp downstream
Tssr108715	transcription start site region 108715	1033 bp downstream
Tssr108716	transcription start site region 108716	1345 bp downstream
Tssr108717	transcription start site region 108717	1370 bp downstream
Tssr108718	transcription start site region 108718	1429 bp downstream
Tssr108719	transcription start site region 108719	1440 bp downstream
Tssr108720	transcription start site region 108720	1444 bp downstream
Tssr108721	transcription start site region 108721	1458 bp downstream
Tssr108722	transcription start site region 108722	1539 bp downstream
Tssr108723	transcription start site region 108723	1567 bp downstream
Tssr108724	transcription start site region 108724	1620 bp downstream
Tssr108725	transcription start site region 108725	1644 bp downstream
Tssr108726	transcription start site region 108726	1739 bp downstream
Tssr108727	transcription start site region 108727	1761 bp downstream
Tssr108728	transcription start site region 108728	1805 bp downstream
Tssr108729	transcription start site region 108729	1892 bp downstream
Tssr108730	transcription start site region 108730	1924 bp downstream
Tssr108731	transcription start site region 108731	1955 bp downstream