rs259001784 SNP Detail

Summary

• ID
  rs259001784
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:72154596 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCA CCTGTCTTTC TACCTGGACT
  G
  TGGCCCTTCC CCTCCCTCTA GGCGC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322705521	CHEV_8_74225851	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259001784					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:72154596 () rs orientation: forward

Symbol	Name	Function Class
B3gnt3	UDP-GlcNAc:betaGal beta-1,3-N-acetylglucosaminyltransferase 3	163 bp upstream
Cpgi20570	CpG island 20570	116 bp distal
Rr382258	regulatory region 382258	605 bp downstream
Rr665157	regulatory region 665157	174 bp distal
Rr665158	regulatory region 665158	within coordinates
Rr665159	regulatory region 665159	19 bp proximal
Rr665160	regulatory region 665160	237 bp proximal
Rr665161	regulatory region 665161	1327 bp proximal
Rr665162	regulatory region 665162	1328 bp proximal
Tssr81749	transcription start site region 81749	198 bp upstream
Tssr81750	transcription start site region 81750	168 bp upstream
Tssr81751	transcription start site region 81751	111 bp upstream
Tssr81752	transcription start site region 81752	654 bp downstream