rs259004575 SNP Detail

Summary

• ID
  rs259004575
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:85390754 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCAGAAGG GAGAAAAATT
  CAAATAACCC CTTTCATTTG CTGTGCAGGC CCTTTAAGAA ACACCCCCTG CCAGCGGGCA
  GACTTCCCGC CACTGCAGCC GGCCGACTTC CCTGGCTAAA TTTGGATGTA ATGACGTAGG
  TTGGCGCCGC GAACCACTTC CGGATGCCCA TATAAGAACA AGGGCAGCCG GTCTTAGCCC
  S
  AGGAGAGGGC TTCCGGGGCG GGGCCCCTTC CATCGGCGAG CACGCCCCTC CAATCCAGCC
  CTCAGGAGCC TAACTAAGTG TTGTCTCGGG TCGTTCGAGT CTGTTTGGTG CTACAGTTCT
  TTGGACAGTC TGCACGGCGT CCCGGAGAGA ACTCGATGTT TCCTTCTCTC ATGCTCTCAC
  ACGCTGCGGC ACCGTCATGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss375403972	MGP_WTSI_8_87188024	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259004575					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375403972	MGP_WTSI_8_87188024	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:85390754 () rs orientation: forward

Symbol	Name	Function Class
4930447I22Rik	RIKEN cDNA 4930447I22 gene	within coordinates
Cpgi20702	CpG island 20702	952 bp distal
Cpgi20703	CpG island 20703	within coordinates
Cpgi20704	CpG island 20704	722 bp proximal
Gm26664	predicted gene, 26664	within coordinates
Gm50464	predicted gene, 50464	1116 bp upstream
Ier2	immediate early response 2	1273 bp upstream
Rr368564	regulatory region 368564	1537 bp downstream
Rr368565	regulatory region 368565	within coordinates
Rr368566	regulatory region 368566	728 bp upstream
Rr401023	regulatory region 401023	1068 bp downstream
Rr666565	regulatory region 666565	781 bp distal
Rr666566	regulatory region 666566	within coordinates
Rr666567	regulatory region 666567	484 bp proximal
Rr666568	regulatory region 666568	1020 bp proximal
Tssr2627	transcription start site region 2627	973 bp upstream
Tssr78424	transcription start site region 78424	1119 bp downstream
Tssr78425	transcription start site region 78425	86 bp upstream
Tssr78426	transcription start site region 78426	118 bp upstream
Tssr78427	transcription start site region 78427	413 bp upstream
Tssr82107	transcription start site region 82107	1266 bp upstream
Tssr82108	transcription start site region 82108	1110 bp upstream
Tssr82109	transcription start site region 82109	1054 bp upstream
Tssr82110	transcription start site region 82110	170 bp upstream