rs259004894 SNP Detail

Summary

• ID
  rs259004894
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:28589540 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAGAAAC TTAGGCTCAC
  TGTAAATCTG TCAAATTTAC AACATCTAGA GTTGGACTTG TGGCTATCAT CGTAGGCTGT
  GTGTACCTCC CTCTGGGTTA CTACACAGAG TCCTTCCTCC ACGATGCCAC CCTTGCCTCT
  TCCACAGCTA CACGCAGCTT TCCTCCCCCT AGGCCAGGAC ACCTCCACCT CTTTCTCCCC
  S
  ACTCCCATAG TGTTTTCGAC CCAGCTCGTC GCCGGCGCTC CATCCCCCTT TACCCTGGTT
  TGACTTGGAC TGGCCTTCGC CTCACAGAGT GCCCAGAAGC TTGCAGTGCC TCCGTGGGTG
  TGCGGCCCCG AGGGCGGGAA GGCCCCTCAG GAAATGGGCG TGGGCGGGGT CGAGGCCATA
  GAGGCCAGGC AGGCTTGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353481810	MGP_WTSI_2_28555048	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259004894					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353481810	MGP_WTSI_2_28555048	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:28589540 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ak8	adenylate kinase 8			Intron
Cpgi11391	CpG island 11391			5 bp proximal
Gm75616	predicted gene, 75616			1969 bp downstream
Rr553884	regulatory region 553884			659 bp distal
Rr553885	regulatory region 553885			within coordinates
Rr553886	regulatory region 553886			144 bp distal
Rr553887	regulatory region 553887			113 bp proximal
Spaca9	sperm acrosome associated 9			Intron
				Noncoding-Transcript-Variant
Tssr16968	transcription start site region 16968			665 bp downstream
Tssr16969	transcription start site region 16969			259 bp upstream
Tssr16970	transcription start site region 16970			623 bp upstream
Tssr16971	transcription start site region 16971			627 bp upstream
Tssr23291	transcription start site region 23291			108 bp downstream
Tssr23292	transcription start site region 23292			133 bp downstream
Tssr23293	transcription start site region 23293			200 bp downstream