rs259005474 SNP Detail

Summary

• ID
  rs259005474
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:7881615 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGTGACCTC CATGCCCAGG ATCTTGGAAT
  AAAACATGGT GGTGTCTTCA ATGTTCTTTA CAGTCATCAC AATGTGGTCA AGTCTACAGA
  TAAGACACGG GGAAGGGATC TGGCTGCTGC TTCTCCATAA CTAAAATGTA AAaacaacag
  Y
  aacaacaata acaacaacaa AGGAACAAAC CTTAAAACTC GGAAAAAGCC AAATTGCCAC
  CAGACACTTC CAAGTGTTCT TCTCCGTTTC CATCACCTGC CCAAGCGCCA TGATCCTCCT
  CATCCTTATT CCAAGGGGAA AACTCCTTCA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325888500	CHEV_X_7592502	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259005474					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:7881615 () rs orientation: forward

Symbol	Name	Function Class
Glod5	glyoxalase domain containing 5	within coordinates
Gm14820	predicted gene 14820	within coordinates
Gm39488	predicted gene, 39488	within coordinates
Rr394694	regulatory region 394694	991 bp downstream
Rr689712	regulatory region 689712	1435 bp distal
Rr689713	regulatory region 689713	288 bp proximal
Rr689714	regulatory region 689714	1665 bp proximal
Rr689715	regulatory region 689715	1881 bp proximal
Rr689716	regulatory region 689716	1964 bp proximal
Tssr162841	transcription start site region 162841	192 bp downstream
Tssr162842	transcription start site region 162842	435 bp downstream