rs259008477 SNP Detail

Summary

• ID
  rs259008477
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:80143260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGTGGCTG GCCCTGAGTC
  CCCAAGACCT CTAGTAGCAG TCCTGCTCCA CTCTCTGTAG CTCCCTGGAC TCACAGGGGA
  CCAGGCAGTT GTGGATGGTC CAGGCCACAG CAGAAGCCAC AGGAAGCATG GGGGGTGGGG
  CAGCAGCTCG CCCAAGTCCA GATTACCAAA TTTTTAAACT GGCCTATTTT TAAATATTTA
  W
  ACTTGGGATG CCTTAGTTGG GGTAGGCTTC CCTTTGCTGG ACCCCTCCAT TGACTTGAAT
  GTAACAACCG GTGTTTTTTT ATCGGACCAT AGGTTGGCAA GCACTCCATC TTTTCCTTCT
  CGGCAGCTAA GAGGAGGCCT TATACCAGGA AAGGTACAGG ATTTCTGCTT GCATCCTCTA
  GGTGACCATG TGACTGAGGG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325030611	CHEV_15_80089489	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259008477					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:80143260 () rs orientation: forward

Symbol	Name	Function Class
Atf4	activating transcription factor 4	1518 bp downstream
Rps19bp1	ribosomal protein S19 binding protein 1	1555 bp downstream
Rr505934	regulatory region 505934	1195 bp distal
Rr505935	regulatory region 505935	1815 bp proximal
Tssr132206	transcription start site region 132206	1924 bp downstream
Tssr132207	transcription start site region 132207	1873 bp downstream
Tssr135434	transcription start site region 135434	1518 bp upstream