rs259009017 SNP Detail

Summary

• ID
  rs259009017
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:65336906 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACACCACG ACCAAAAGCA
  ACTTGGGGAG GAAAGGGTTT ATTAGGCGTA CACATCCCAG TCACAGTTTA TTATTGAAAG
  AAGCTGAAGC ATAAACTTTA AAGCAGGGCA GGGCCCTTGG AGGCAGAAAT TGAAACAGAG
  GCCTTGAAGT TAGGCTGTTC ACTGGCTCGT TTCCCATGGC TGGCTCAGTT TTCTTTTTTT
  C
  TTTTTTTTTT TTTTTTCTTT TTTACACTAG AGACCACCTG CCCAAGGGTG GCTCTGTGCA
  TAATAGGCTG GGTCTGCCCC AGACTTGCCC ACAGGCCAAT CTGATAGACG AGTTTCTCCC
  TTCCCCCCTT CCCTCCTCCC TCTCTCCACT TGGGGGAGAA CATTTTGAGG TCTCCCTCTA
  CATGGCTATT TTGGAACTCA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	CE/J	DBA/1J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss391347594	MGP_WTSI_14_65718294	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BUB/BnJ	C57BL/6J	C57BL/10SnJ	CE/J	DBA/1J	FVB/NJ	I/LnJ	LG/J	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs259009017					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391347594	MGP_WTSI_14_65718294	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:65336906 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6626	CpG island 6626	1017 bp distal
Extl3	exostosin-like glycosyltransferase 3	within coordinates
Gm52119	predicted gene, 52119	within coordinates
Rr369853	regulatory region 369853	1775 bp downstream
Rr404153	regulatory region 404153	1150 bp downstream
Rr494017	regulatory region 494017	1363 bp distal
Rr494018	regulatory region 494018	861 bp distal
Rr494019	regulatory region 494019	1309 bp distal
Rr494020	regulatory region 494020	353 bp distal
Rr494021	regulatory region 494021	1155 bp proximal
Tssr126200	transcription start site region 126200	1240 bp upstream
Tssr129239	transcription start site region 129239	1357 bp upstream