rs259010005 SNP Detail

Summary

• ID
  rs259010005
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:123260833 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGCTCCCC AGCATCCCAG
  AAGCTGTGAA GGAAAAACAC AGGAGATCTT AAATATCAGA AATAGCAGCC TTAACATAGC
  AAACAACTTA CATATTTGTT ATTTAACTAT CATTTTGGGA GATGGAAATT ATAATCTCCA
  TTTTATCAAT GAGAAAACCC ATTTGCCTAC ATCATCAGAT GGTGGGACAT TACTGGATTT
  Y
  TATGCTGTTA TGCAGATCTA TAGATTTAAA CTCATAAAGG GGCATCATGG TGAGTACTGC
  TGGCCTGGCA TATGTGCTGC CTCTGTTCTT CTACCTTACA CCAATATTAC TTTTACTGCT
  CTGCCAGAGT TTGTTTTCCT GAGGCATCCT TCATGTACAG TAAGCCACAT CTTAGGTTTT
  AGGGCAGTCA AGCCCCTAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369922422	MGP_WTSI_6_123233892	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259010005					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369922422	MGP_WTSI_6_123233892	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:123260833 () rs orientation: forward

Symbol	Name	Function Class
Clec4e	C-type lectin domain family 4, member e	within coordinates
Tssr58808	transcription start site region 58808	1094 bp downstream
Tssr58809	transcription start site region 58809	457 bp downstream
Tssr58810	transcription start site region 58810	432 bp downstream
Tssr58811	transcription start site region 58811	343 bp downstream
Tssr63020	transcription start site region 63020	1370 bp upstream
Tssr63021	transcription start site region 63021	1292 bp upstream
Tssr63022	transcription start site region 63022	1253 bp upstream
Tssr63023	transcription start site region 63023	1198 bp upstream
Tssr63024	transcription start site region 63024	1100 bp upstream
Tssr63025	transcription start site region 63025	1068 bp upstream
Tssr63026	transcription start site region 63026	1047 bp upstream
Tssr63027	transcription start site region 63027	1009 bp upstream
Tssr63028	transcription start site region 63028	984 bp upstream
Tssr63029	transcription start site region 63029	956 bp upstream
Tssr63030	transcription start site region 63030	900 bp upstream
Tssr63031	transcription start site region 63031	870 bp upstream
Tssr63032	transcription start site region 63032	839 bp upstream
Tssr63033	transcription start site region 63033	825 bp upstream
Tssr63034	transcription start site region 63034	799 bp upstream
Tssr63035	transcription start site region 63035	784 bp upstream
Tssr63036	transcription start site region 63036	717 bp upstream
Tssr63037	transcription start site region 63037	684 bp upstream
Tssr63038	transcription start site region 63038	659 bp upstream
Tssr63039	transcription start site region 63039	591 bp upstream
Tssr63040	transcription start site region 63040	547 bp upstream
Tssr63041	transcription start site region 63041	500 bp upstream
Tssr63042	transcription start site region 63042	480 bp upstream
Tssr63043	transcription start site region 63043	463 bp upstream
Tssr63044	transcription start site region 63044	428 bp upstream
Tssr63045	transcription start site region 63045	348 bp upstream
Tssr63046	transcription start site region 63046	335 bp upstream
Tssr63047	transcription start site region 63047	314 bp upstream
Tssr63048	transcription start site region 63048	280 bp upstream
Tssr63049	transcription start site region 63049	256 bp upstream
Tssr63050	transcription start site region 63050	211 bp upstream
Tssr63051	transcription start site region 63051	189 bp upstream
Tssr63052	transcription start site region 63052	1313 bp downstream
Tssr63053	transcription start site region 63053	1423 bp downstream
Tssr63054	transcription start site region 63054	1590 bp downstream
Tssr63055	transcription start site region 63055	1617 bp downstream
Tssr63056	transcription start site region 63056	1658 bp downstream
Tssr63057	transcription start site region 63057	1691 bp downstream