rs259022450 SNP Detail

Summary

• ID
  rs259022450
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:176647752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAAAGTTTT CACATGAGTC
  CAAAGGTAAA GAAAGTATCC TGATCCCTTT AGCACACATC CCAGAAACCT GGATCATTAA
  GTCCACTGAA AGGTTCGAAG GAGTAGACCT AGAGCTGATA CTGGATCAGG CTTTGGTTAT
  ATTCTGCCTT ACCAGCACTA GTAACATCAG CGTGTTATTA TTAATGCTGC CTACCTCATC
  R
  AAAGGCGGCT ACTGCTGCAG TAATAGTGTG GTATGCATGG TGGGTTTAAC ACTTACAGTG
  GGACTAGCTC TTCAAGGCTC AGCAGGAGCT GCATTGAGCT CAACCAGGGA TTCTCAACTA
  GGGATAATTT GTCTGGCAAG CAAACATTTA GTAATATCTA CAGGCATAGT TGATCATCAC
  AATTGGGGGT AGAAAGGAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320157862	CHEV_1_178750317	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259022450					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176647752 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr423911	regulatory region 423911			898 bp distal
Rr423912	regulatory region 423912			1793 bp proximal
Sdccag8	serologically defined colon cancer antigen 8			Intron
				Noncoding-Transcript-Variant