rs259024162 SNP Detail

Summary

• ID
  rs259024162
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109483613 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ATTTAAAAA AAAATAGTAA GTAAAAACAA
  GGCAGTGAAG CAAGAAATAA TTACCAAATG CTTATAAAAT TAGGTTTGCC TCCCCAACAT
  CCCTGGGTAG AACAAAAGAG TCAGACTCCA GAGACCAACT CCTGGGCCTG TGACTTCCAG
  K
  CATGGCTGCT ATGTATGTCC TTCCTTTCCC AACTTCTACC TAAATACCAT GTCTTTCCAG
  CCACGAGAGA AAAGCGGTGA GAGAGGGTCA TTGAATTCTG CATTTCAGAA ATATTTTAAC
  ATATTTTGTA ATTTTTACAG TTAAAAAAAG                                 
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320869997	CHEV_3_109379215	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259024162					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109483613 () rs orientation: forward

Symbol	Name	Function Class
Rr583433	regulatory region 583433	1838 bp distal
Rr583434	regulatory region 583434	1905 bp proximal
Vav3	vav 3 oncogene	Intron