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rs259026089 SNP Detail
Summary
  • ID
    rs259026089
  • Variation Type
    SNP
  • Alleles
    C/G/T
Genome Location and Flanking Sequence
  • Location
    Chr17:31093589 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                CACCCCAGGC CTCTGGGGGC
    GCTCTACTCT CATTTCATCA CGTGGAGGAG GTGGGGTGGA GCCTAGGGTT GCCTAGATTG
    ACTCAGCGCA AGGTGCCATT GACAACAGCG CCAAGTCGTA GGCTTGCAAC AGCTCAAACT
    GGATTTACAA CTCCCCGCAG AGGTGACTTG GCCTTCCTGT TTCCCAGGTC GACCACTCCA
    B
    GTTCCAATAA CTCGCAGCAG GGCACTCCCG AGGTGCAGTT AGATTCACTG TGTCCCCTGG
    GAAACAAGGC CAAATGTTTC CGTGAATGCG ATTGCCCCCC CTGGCGTTTT CTTATCAGCT
    AGCACCTTAA GACTGGCTTG TGTTTTCTTT CCGAACTGAC AGCCCTCATT ACATAAGGGA
    TGCCTAGTTT TCAGCACCTC                                            
    
    B = C/G/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss397996194 MGP_WTSI_17_31011560 EVA_MGPV3 EVA_MGPV3 f SNP C C C C C C C C C C C C C C C C C C C T C C C C T T C C C T T C C C C C C T T C C C C G C C C C
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs259026089 SNP C C C C C C C C C C C C C C C C C C C T C C C C T T C C C T T C C C C C C T T C C C C G C C C C
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss397996194 MGP_WTSI_17_31011560 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/G/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr17:31093589 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi8937 CpG island 8937 within coordinates
Dnah8 dynein, axonemal, heavy chain 8 within coordinates
Gm9937 predicted gene 9937 within coordinates
Gm50252 predicted gene, 50252 within coordinates
Rr330583 regulatory region 330583 within coordinates
Rr341200 regulatory region 341200 within coordinates
Tssr147267 transcription start site region 147267 416 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory