rs259027361 SNP Detail

Summary

• ID
  rs259027361
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:29780287 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCCTCCTC CCGCTAACGG
  GCGGGCCGGC CGCCTCCGTC CTCTCCGGGC CATCGGCAGC GCTCTTTCCC TCCTCTGCTG
  TCCTCGGGCA GGGCTGCGCC CTTCTATGGG CAGAACCCCG TCCCCTCTTG CCCGCTGGTG
  GGTGGCCGTG CGCCCCATCC TCCCCGGAGG CCACCCCTGC TCTCTGCGGA CTGGGCCGCA
  K
  CAGTTACATG CGCTCGGGGT GGGCAGGCCT CCGGGGACCC TCCAGACCAG CTCCAGGGAT
  GTGGGTGATC CAGGAGCGGT CTGGCTCTCC ATGCCGCCCC GCCTAGGCCG CCGCTCCACC
  CCTTCCATCT ATTGGTTCTC CCTGGTAGCT ATTCTGCCGG GAACGCCCCT TCACCTAGGA
  GACAGTTGCC CAGGCACTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353505614	MGP_WTSI_2_29745795	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259027361					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353505614	MGP_WTSI_2_29745795	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:29780287 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11418	CpG island 11418	within coordinates
Gm75149	predicted gene, 75149	within coordinates
Odf2	outer dense fiber of sperm tails 2	within coordinates
Rr396853	regulatory region 396853	399 bp downstream
Rr554173	regulatory region 554173	within coordinates
Rr554174	regulatory region 554174	328 bp proximal
Rr554175	regulatory region 554175	401 bp proximal
Tssr452	transcription start site region 452	559 bp downstream
Tssr453	transcription start site region 453	282 bp downstream
Tssr454	transcription start site region 454	259 bp downstream
Tssr455	transcription start site region 455	230 bp downstream
Tssr456	transcription start site region 456	161 bp downstream
Tssr17034	transcription start site region 17034	1069 bp downstream
Tssr17035	transcription start site region 17035	1032 bp downstream
Tssr17036	transcription start site region 17036	522 bp downstream
Tssr17037	transcription start site region 17037	439 bp downstream
Tssr17038	transcription start site region 17038	194 bp downstream
Tssr17039	transcription start site region 17039	168 bp downstream
Tssr17040	transcription start site region 17040	171 bp upstream
Tssr17041	transcription start site region 17041	245 bp upstream
Tssr17042	transcription start site region 17042	259 bp upstream
Tssr17043	transcription start site region 17043	280 bp upstream
Tssr17044	transcription start site region 17044	423 bp upstream
Tssr17045	transcription start site region 17045	586 bp upstream
Tssr17046	transcription start site region 17046	1710 bp upstream
Tssr23341	transcription start site region 23341	59 bp downstream