rs259029502 SNP Detail

Summary

• ID
  rs259029502
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:95737753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGCAGGC AGGCATGGCG
  CTGGTGAATT AGCTGAGTGC TTACATCTTG ATCCACAAGC ACTGGACAGA GGGAAGAGAG
  ACGAGTGAAT GGGGAGACAG GGAGAACGGG GAGGGAAGAG AAGGAAGAGG AAGAGGGAGA
  GAGAAAGAAG TAATTGGAAA TGGCATTGGC TTTTGAAATC TAAAAGTCCA CCTGCCCCCA
  C
  TCCTAGTGAC ACTCCTCCTC CAGCAATCCT TCCTAAACAG TTCCACCAAC TGGGGATGCC
  AAGTGTTCAA ATATATGAGC CTCTGGGGGT CATTCTCCTT CAAACCACCA CACCATGAGT
  CTGAGCTCTA GCTCTAGCTC TATGTAAACT AAATATAGAG GCACCTGCCT GTAATCCCAG
  TACCCAGAAG GTGGGATGAA                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323104507	CHEV_9_95756119	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259029502					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:95737753 () rs orientation: forward

Symbol	Name	Function Class
1700065D16Rik	RIKEN cDNA 1700065D16 gene	within coordinates
Atr	ataxia telangiectasia and Rad3 related	1897 bp upstream
Cpgi22158	CpG island 22158	1680 bp proximal
Rr206894	regulatory region 206894	1247 bp proximal
Rr368834	regulatory region 368834	1710 bp upstream
Tssr86577	transcription start site region 86577	1928 bp upstream
Tssr86578	transcription start site region 86578	1994 bp upstream
Tssr90940	transcription start site region 90940	1859 bp downstream