rs259032448 SNP Detail

Summary

• ID
  rs259032448
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:129268670 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCAACTC CCCGTCAGGT
  CAATGATCTT TTAAAGAGTG TTGGAAAAAG ACAATCACGA TTTTAGGAAC CATCAATGTT
  GAAGGTCTTC GGACTAGAAA GGAAAGAAGT CTTTTAGACT GACCTTTGGG CGACACGGGA
  AACCTGGATG AAATTTGTGC TCCAGAAAGC CATCTTTTCC CACTGCACAC AGCCCTGATG
  K
  AGGCCTTAGT GTGTGGTCCT AGTAAAAACC CCACCTCCTA ACTTTGGGCT AACGGGAAGA
  GAGCAAACTG TTCTTTGAAT GGCGACTGTA TTTCTTCGGA GGACGAACGG CCATGTACAA
  TTCTGGGAAG GTTTAGAATT AAGTCCAGAA ACAACTTAAG AGCTGAGCTT TAGAAATCTG
  TGTCGCCTCC AAAGTTCAGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321312480	CHEV_4_129052121	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259032448					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:129268670 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14890	CpG island 14890	1952 bp proximal
Rr377176	regulatory region 377176	within coordinates
Rr600213	regulatory region 600213	852 bp distal
Rr600214	regulatory region 600214	199 bp distal
Rr600215	regulatory region 600215	1893 bp proximal
Tssr39144	transcription start site region 39144	451 bp upstream
Tssr43495	transcription start site region 43495	550 bp upstream
Tssr43496	transcription start site region 43496	1135 bp downstream
Zbtb8a	zinc finger and BTB domain containing 8a	within coordinates