rs259033171 SNP Detail

Summary

• ID
  rs259033171
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:72570071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCCCCAGTA CTCTCGGAGG
  ACGAGGTGCG GGAAGGCTGC GTGCCGCGCG GGGGTTCATC GTGGCGAGGG GTGGCCGGGG
  TGGGTAGCGG GGGTGGCGGG CGATCGGGGC CCGAATTTGG CCCCGCGCTC CGGAGCGGGG
  CAGGCGGTGA GGGGGAGATG GAGAGAGGCG CGCACGAGGC CTCTGCGGGA GCAGATTCCC
  Y
  GCTTGCTCGC CTCGCTGCTC GGGGCCTTGG GCCTCCCCCG GGGGGCCTCC GGGGGCCTTT
  GGCTGCGGCC TGGGCGCGCT CGCTCACCCT CTCCGGGAGG GCCATGGCTT GGGTGGGGCG
  GCCTCCCGAG ACTCAGCATC CCGCTCCTGC CGCAGCGGGA GCCGACAGAA CTTAGCGACT
  TTGCCACTAT GGCTTCCCGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss378022970	MGP_WTSI_9_72510596	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259033171					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss378022970	MGP_WTSI_9_72510596	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:72570071 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi22018	CpG island 22018			within coordinates
Nedd4	neural precursor cell expressed, developmentally down-regulated 4			Intron
				Noncoding-Transcript-Variant
Rr682797	regulatory region 682797			297 bp distal
Tssr86018	transcription start site region 86018			777 bp downstream
Tssr86019	transcription start site region 86019			377 bp downstream
Tssr86020	transcription start site region 86020			321 bp downstream
Tssr86021	transcription start site region 86021			266 bp downstream
Tssr86022	transcription start site region 86022			966 bp upstream
Tssr90495	transcription start site region 90495			461 bp downstream
Tssr90496	transcription start site region 90496			497 bp downstream
Tssr90497	transcription start site region 90497			515 bp downstream