rs259034719 SNP Detail

Summary

• ID
  rs259034719
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:122966813 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    tattaaaag agagctcata gatccataca
  ccagactaac gcaggaatag agtatatgga taaactccag gaggtgagct tccttgaaac
  tctctgcctt gtgagtggct tttaggcttc acagtctgtc aagctgactc gactgaagtg
  Y
  gtggcaGTGA GGGACAACGA TCCTCTAGAA TGTGATATCA CAATTTGTTT CTTCAGTCAA
  AATCAATGTC ATGTCTTAAG TGTTTGCCCA TTTTGTCTGG TTTTCCTTAA AAAAAAGGAA
  AACTGGTTTG CATATAGAAC TGCGCGAGTT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321934838	CHEV_6_122939872	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259034719					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:122966813 () rs orientation: forward

Symbol	Name	Function Class
Clec4a4	C-type lectin domain family 4, member a4	513 bp upstream
D6Mit300	DNA segment, Chr 6, Massachusetts Institute of Technology 300	1499 bp proximal
Tssr58744	transcription start site region 58744	441 bp upstream
Tssr58745	transcription start site region 58745	496 bp upstream