rs259039301 SNP Detail

Summary

• ID
  rs259039301
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:126576004 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGAACTG GGCCCAGGGC
  TCAGGTGGAG CGGCTGATGC CCGGAGCTGA AAGGTGAGAC CACGCTGGTA AGGCTGGTAC
  CAAGACCTTG CCCCTCCAGA CCTGGGCCGA GACGACAAGG GGAGCCGCCA AGATGCCAGA
  GGAAAATATC TTCCTGTTCG TGCCTAACCT TATCGGTGAG TGCTGCCTGC GGCCCCAAAA
  Y
  CAGCGGGGTG GGGGTGGGGA GGGGCGCGAG AAACCCTAAG CTGGCTCCCC AATCACACCC
  TGTACCTCTC CCATCCCATC CCAAGGTTAT GCCCGGATTG TCTTCGCCAT CATTTCCTTC
  TACTTTATGC CCTGCTGCCC CTTCACGGCC TCCTCCTTCT ATCTACTCAG CGGACTCCTA
  GACGCTTTCG ATGGACACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss373078384	MGP_WTSI_7_134120346	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259039301					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss373078384	MGP_WTSI_7_134120346	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:126576004 () rs orientation: forward

Symbol	Name	Function Class
Cdipt	CDP-diacylglycerol--inositol 3-phosphatidyltransferase	Intron
Cdiptos	CDIP transferase, opposite strand	429 bp upstream
Cpgi19724	CpG island 19724	within coordinates
Gm73941	predicted gene, 73941	1794 bp downstream
Rr368439	regulatory region 368439	523 bp downstream
Rr655656	regulatory region 655656	1055 bp distal
Rr655657	regulatory region 655657	within coordinates
Tssr2401	transcription start site region 2401	234 bp downstream
Tssr69141	transcription start site region 69141	1208 bp downstream
Tssr69142	transcription start site region 69142	535 bp downstream
Tssr69143	transcription start site region 69143	432 bp downstream
Tssr69144	transcription start site region 69144	410 bp downstream
Tssr69145	transcription start site region 69145	366 bp downstream
Tssr69146	transcription start site region 69146	288 bp downstream
Tssr69147	transcription start site region 69147	255 bp downstream
Tssr69148	transcription start site region 69148	213 bp downstream
Tssr74865	transcription start site region 74865	1416 bp upstream
Tssr74866	transcription start site region 74866	989 bp upstream
Tssr74867	transcription start site region 74867	985 bp upstream
Tssr74868	transcription start site region 74868	727 bp upstream
Tssr74869	transcription start site region 74869	701 bp upstream
Tssr74870	transcription start site region 74870	690 bp upstream