rs259039541 SNP Detail

Summary

• ID
  rs259039541
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:141547111 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGGCAGAA AAGACTCGGA
  AGGAGAGTTT CTGGTTTCTT CCAGGCTCCA CACGGCCTTG ATCTAGAATG TTCCTGACAT
  CTAGCTATGT GTCTGCCCTT GGCTTAGAAT TCCTCTTTTT GCGGGGCTAG TTCCACAGGT
  TTCTCTTACT TTCCTATGAG AAAGAGCTGT CGAGAGCTGG AAAAATACTC CGGGGTCAGG
  R
  TAGTTTTCCT CATGACCCAA GTGACATTGT CTACATCACT GCCATGGTTG GCCAGGATAA
  ACGTCATTTA ATTCTGTGTG TGTGTGTGTG TGTGTGTATG TGGATGTCAG AAGTCAACCT
  GTAGTGCACT GGTTCTCAAC CTTCCTAATG CTGTGACTCT TTAATACATA TAGTTCGTGT
  CCTGGTAACA CCCAACCATG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363530391	MGP_WTSI_4_141375715	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259039541					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363530391	MGP_WTSI_4_141375715	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:141547111 () rs orientation: forward

Symbol	Name	Function Class
Cela2a	chymotrypsin-like elastase family, member 2A	within coordinates
Cpgi15246	CpG island 15246	723 bp distal
D4Mit32	DNA segment, Chr 4, Massachusetts Institute of Technology 32	51 bp proximal
Gm56298	predicted gene, 56298	within coordinates
Tssr40105	transcription start site region 40105	1901 bp downstream
Tssr40106	transcription start site region 40106	1870 bp downstream
Tssr40107	transcription start site region 40107	1818 bp downstream
Tssr40108	transcription start site region 40108	756 bp downstream
Tssr40109	transcription start site region 40109	721 bp downstream
Tssr40110	transcription start site region 40110	698 bp downstream
Tssr40111	transcription start site region 40111	1525 bp upstream
Tssr40112	transcription start site region 40112	1553 bp upstream
Tssr40113	transcription start site region 40113	1582 bp upstream
Tssr40114	transcription start site region 40114	1904 bp upstream
Tssr40115	transcription start site region 40115	1938 bp upstream
Tssr40116	transcription start site region 40116	1978 bp upstream
Tssr44369	transcription start site region 44369	1903 bp upstream
Tssr44370	transcription start site region 44370	1863 bp upstream
Tssr44371	transcription start site region 44371	1832 bp upstream
Tssr44372	transcription start site region 44372	1801 bp upstream
Tssr44373	transcription start site region 44373	1514 bp upstream
Tssr44374	transcription start site region 44374	668 bp upstream
Tssr44375	transcription start site region 44375	435 bp upstream
Tssr44376	transcription start site region 44376	417 bp upstream
Tssr44377	transcription start site region 44377	184 bp downstream
Tssr44378	transcription start site region 44378	303 bp downstream
Tssr44379	transcription start site region 44379	1552 bp downstream
Tssr44380	transcription start site region 44380	1564 bp downstream
Tssr44381	transcription start site region 44381	1920 bp downstream
Tssr44382	transcription start site region 44382	1939 bp downstream
Tssr44383	transcription start site region 44383	1990 bp downstream