rs259042587 SNP Detail

Summary

• ID
  rs259042587
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:84467979 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGAACGGAC AGCGTCTGGG
  GTTGATAGAG GGCTGTGGCG GCCGGCTGGG CTGGGCTTTT ATGCAGCGGG CGTGAGCAGG
  GCCCTCCCCG GAACTGTCCT CCCCGCTGGA AAGTAACAGG AAAGTGCCGG GGAAACAGAC
  CCAGGGCGCG CCGCGCGCCC GCGTCTGGAA CAAACGCAAC ATTCCTCCCC CCCCCCCCCC
  S
  CGCGCGGCTC CGACACCCGC CCCCGCGGGG AGCTGGGTGG TGTGGTTCAG GCGTCCTGGG
  ACGGGGACCA GGCACATCGG ACAGAGCTGG GTGGAGCTCC CACCCGAACG ATGTCCTGGG
  CGACCCTCGC CTTTCCCATC AGCAGGACTT GTCGGCTTCT TTTCCAAGAG AGAAACTGAA
  GTTCAGAGAA GCCAGGGGCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss375384476	MGP_WTSI_8_86265249	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs259042587					SNP	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375384476	MGP_WTSI_8_86265249	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:84467979 () rs orientation: forward

Symbol	Name	Function Class
Adgre5	adhesion G protein-coupled receptor E5	167 bp upstream
Cpgi20655	CpG island 20655	within coordinates
Gm46046	predicted gene, 46046	within coordinates
Rr368559	regulatory region 368559	1212 bp downstream
Rr666301	regulatory region 666301	90 bp distal
Rr666302	regulatory region 666302	within coordinates
Rr666303	regulatory region 666303	20 bp proximal
Rr666304	regulatory region 666304	866 bp proximal
Tssr2618	transcription start site region 2618	1237 bp upstream
Tssr2619	transcription start site region 2619	949 bp downstream
Tssr2620	transcription start site region 2620	53 bp downstream
Tssr2621	transcription start site region 2621	1205 bp upstream
Tssr78291	transcription start site region 78291	994 bp downstream
Tssr78292	transcription start site region 78292	972 bp downstream
Tssr78293	transcription start site region 78293	831 bp downstream
Tssr78294	transcription start site region 78294	776 bp downstream
Tssr78295	transcription start site region 78295	730 bp downstream
Tssr78296	transcription start site region 78296	711 bp downstream
Tssr78297	transcription start site region 78297	38 bp upstream
Tssr82049	transcription start site region 82049	1280 bp upstream
Tssr82050	transcription start site region 82050	1192 bp upstream
Tssr82051	transcription start site region 82051	918 bp upstream
Tssr82052	transcription start site region 82052	160 bp upstream