rs259043502 SNP Detail

Summary

• ID
  rs259043502
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:105285252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGGATAT GCTTTTAATG
  TCATGTAACC CCAGGAGAAT CTAAAGATAA GGTCTCTTCC TGCTTTTTCA CTTAACATAT
  AGTGGAGAAA AGGGGAGATA GGTGTCCCCT GCTGGTCTGG GGCACCATGC CTGAGTTCTG
  GGGCCTTTTG GGATCCATTC TATTAAGAAA CTGAAAACTG ACCTGAGTTA TGTCTCCTCA
  W
  CTCTGTGGTT CAGCTAAAGG AGCTCTGTTA ATGCACAGAG CAAATGGCTT CTTCTAGACT
  TCAGGTACTG GGCTCCCTTC ATGGGTCCTA TGTTCCTTCT TACACAGCAG TGGTTCTCAA
  CCTTCCTAAT ACCGTGACCC TTTAACACAG TTGCTCATGT TATGGTGACC CCCCCAGCCA
  TAAAATTGTT TTTGTTGCTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350818427	MGP_WTSI_1_107254104	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259043502					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350818427	MGP_WTSI_1_107254104	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:105285252 () rs orientation: forward

Symbol	Name	Function Class
Cpgi626	CpG island 626	506 bp distal
Gm17634	predicted gene, 17634	within coordinates
Rnf152	ring finger protein 152	817 bp upstream
Rr416387	regulatory region 416387	1510 bp distal
Rr416388	regulatory region 416388	868 bp distal
Rr416389	regulatory region 416389	1479 bp distal
Rr416390	regulatory region 416390	947 bp distal
Rr416391	regulatory region 416391	785 bp distal
Rr416392	regulatory region 416392	195 bp distal
Rr416393	regulatory region 416393	1497 bp proximal
Tssr8255	transcription start site region 8255	759 bp downstream
Tssr8256	transcription start site region 8256	741 bp downstream
Tssr8257	transcription start site region 8257	670 bp downstream
Tssr8258	transcription start site region 8258	438 bp downstream
Tssr13126	transcription start site region 13126	1011 bp upstream
Tssr13127	transcription start site region 13127	876 bp upstream
Tssr13128	transcription start site region 13128	813 bp upstream
Tssr13129	transcription start site region 13129	739 bp upstream
Tssr13130	transcription start site region 13130	564 bp upstream