rs259047738 SNP Detail

Summary

• ID
  rs259047738
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:176648522 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCACTGTC ACTGAGGTTG
  TCTTTCCACT GGGGCCATCC ACTTCAGCAC GTTTTCAGCC ATTAGAGTTA GGATCACAGT
  TTTGTTGAGA CATTTTTATT TCTGTATAGT TCTATTAGCC ACTTTGACTA TTGTGCTGGC
  TGCTTACAGA CTTGGCTCTG TCCATCTTTG GAGGAGACTG CTCTTTTCAT GATTTTGCTA
  Y
  CTGCTAGTTC CCTAGTAAAC CATGATAGTC ATCTTCTAAA CCGGGCTGTA GTCCCGTCAG
  GTATAAACAG ACACGTTTTT CTTGTCTTCC TGTGGTTGGT TGGCTTCTCT CTCTCTCTCT
  CTCTCTCCCT CTCTCTCTCT CTCTCCCTCT CTCTCTCTCT CTCTCTCTCT CTCTTTCTTT
  TTCCTGCTTG TCTGCCTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320157864	CHEV_1_178751087	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259047738					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:176648522 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr423911	regulatory region 423911			1668 bp distal
Rr423912	regulatory region 423912			1023 bp proximal
Sdccag8	serologically defined colon cancer antigen 8			Intron
				Noncoding-Transcript-Variant