rs259051442 SNP Detail

Summary

• ID
  rs259051442
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:99241096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GGTCCTTAA AGCCTTGCTT TTCTCTCTTA
  AACTATTTGT TACTTAAGCC ATCTGGACCC AGCTCCCAGC ACAGTCAAAC TGAGCTTAGG
  GACCATTCTC TACCCCACCC CCACTCCCAT CCTCAGCGTC ATTTTAAAAA CCCTGTCTGC
  M
  GGGGAGTTGG TCAGTGCCTT TCCTTTCTGG GACTGGGAGC GTCCAGGAAA CCGGCCATCT
  TCACTCATAG TCATTTACTC TCTCTTGGTG CACCCAGAGA GGGCAAGCGA CCTGCGAATG
  GAAAAAGAAA GAGGAAGCCA GCCTTGAGGT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323135611	CHEV_9_99259462	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259051442					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:99241096 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22193	CpG island 22193	338 bp distal
Esyt3	extended synaptotagmin-like protein 3	486 bp upstream
Rr198328	regulatory region 198328	1705 bp proximal
Rr206935	regulatory region 206935	295 bp distal
Tssr91051	transcription start site region 91051	491 bp upstream