rs259052587 SNP Detail

Summary

• ID
  rs259052587
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:48745560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCATAAG ATCCGGCTGT
  AAGACCTTTT TCCTAATTAG TTACTAATTG GGAATGGCCT AGCCCATTGT GGGTGGTGCC
  ATCCCTGGAA TGGTGGTCCT TGGTGCTACA ACAGAGCAGA CTGAGTCAGC CATGGGGAGC
  AAGACGCAAG CAGCACTCTT CCATGGCCTC TGCATCAGCT CCTCCTGCCT GCAGGTTCCT
  R
  CCCTGTTTGA GTTCTTGTCT TCCTTCAGAG ATGAACAGTG CTGTGCAAGT GTAAACCGAA
  TAAACCCTTT CCTCCACAAC TTGCTATTTG GTCATGGTGT TTCTTCGAAG CAAACAGTAA
  CCCTAACTGA GACAGCGAAT CTATCAGTTT ATGGGGATTG CTTCCAGGAC TGTGGGTGGA
  GGGTTATTTG CGGGAACATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323664695	CHEV_11_48668235	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs259052587					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:48745560 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2785	CpG island 2785	1241 bp distal
Cpgi2786	CpG island 2786	511 bp distal
Cpgi2787	CpG island 2787	590 bp proximal
Gm16170	predicted gene 16170	1240 bp upstream
Gm73211	predicted gene, 73211	within coordinates
n-TPtgg4	nuclear encoded tRNA proline 4 (anticodon TGG)	1547 bp upstream
n-TTtgt2	nuclear encoded tRNA threonine 2 (anticodon TGT)	1042 bp downstream
n-TVaac7	nuclear encoded tRNA valine 7 (anticodon AAC)	1904 bp upstream
Rr402520	regulatory region 402520	1182 bp downstream
Rr446140	regulatory region 446140	1251 bp distal
Rr446141	regulatory region 446141	1525 bp distal
Rr446142	regulatory region 446142	750 bp distal
Rr446143	regulatory region 446143	1061 bp distal