rs259069488 SNP Detail

Summary

• ID
  rs259069488
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:42202674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTTTCCA GGACCGGCTA
  GAGCCAGGAT TCCGTCCTTT GGCCACCTGC TGCGCTGCCT CCTAGCAGCA CCCACAGAGG
  AGACTATCTT GACTGTCACC AGGCACCAAG CTCAAGGTAT AACCCACGTA GGCGGTGCAC
  CAGATAACAT CAAAGCTTTG GGTAGGGGCC AGAAAAGCGG GGTAGGGGGG TGTGGGGGGG
  T
  GGGGGGGGCA GCGCAGGGAG GGAACCAAGC GCCTCCCCCA GCGTTTCCTC TCACGCCCAC
  TTCCAACCTA GGAGGCTTTT GGTTTCTGCT TTTGTTTTTA AAATGAAAAG TTGAACCAGG
  AAGCTTGGGA GCAGACTTTT TTTTTTTTTT TTTTTTTTTT TTTTTTTTGC CTTGTAGTTC
  GGTAAGTTTT CCTCCCTCCG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	C57BL/6J	C57BL/6NJ	CE/J	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	RIIIS/J	SM/J	SWR/J
ss388403579	MGP_WTSI_13_42144567	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	C57BL/6J	C57BL/6NJ	CE/J	LG/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	RIIIS/J	SM/J	SWR/J
rs259069488					SNP	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388403579	MGP_WTSI_13_42144567	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:42202674 () rs orientation: forward

Symbol	Name	Function Class
Cpgi5502	CpG island 5502	221 bp proximal
Gm28707	predicted gene 28707	within coordinates
Gm61288	predicted gene, 61288	within coordinates
Gm61314	predicted gene, 61314	1515 bp downstream
Rr478102	regulatory region 478102	within coordinates
Rr478103	regulatory region 478103	786 bp proximal
Tssr119424	transcription start site region 119424	169 bp upstream
Tssr119425	transcription start site region 119425	397 bp upstream