rs259077114 SNP Detail

Summary

• ID
  rs259077114
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:118782850 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTCATCT CTCTTCAGGA
  ATTCACTACA AGTCCCAGCT TCACTTTCCA AAGGACATTA AGATGTGGGA CCAGCCAGCC
  ACTCATCTGC AGCGCTGGGA GCTGCCTGGG TAGGGAGGAC TGGGGTTGAC CTGGAGGCAA
  AGCCAGAGGA AGCAGACATA AACTCAAGGA GAATGCCATC CTCTGAGGTA CCAGTGTCCA
  Y
  CTCTGCCCCA TACATCCCAG ACCCAGAGAC AGTCCTTGAC TCTTCTTAGC TACAGGGAGA
  CACCTTGCTC CCTAGGGCTA GTGATAGTGG ATAGCAAGGG CTCACCTCAT TGTCTCTTGA
  ACCTGAGAAG CTATGATCAA GGTCTTGGTT TTATGTAGCA TTAGGGAAGT ACAGAGTGTG
  GCAGAAGTGT TCTCAGCTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss372909517	MGP_WTSI_7_126327141	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs259077114					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss372909517	MGP_WTSI_7_126327141	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:118782850 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19631	CpG island 19631	539 bp proximal
Cpgi19632	CpG island 19632	1653 bp proximal
Gm73654	predicted gene, 73654	1285 bp upstream
Gpr139	G protein-coupled receptor 139	within coordinates
Rr381384	regulatory region 381384	1469 bp upstream
Rr654599	regulatory region 654599	1808 bp distal
Rr654600	regulatory region 654600	966 bp proximal
Rr654601	regulatory region 654601	1296 bp proximal
Tssr74477	transcription start site region 74477	900 bp downstream
Tssr74478	transcription start site region 74478	921 bp downstream
Tssr74479	transcription start site region 74479	971 bp downstream